View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_low_35 (Length: 268)
Name: NF19418_low_35
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 18362888 - 18362647
Alignment:
| Q |
19 |
tatagagatcacaggttatttgcatacaggtttcaccaggaaataacattctctcaagaatttctccagagttaataaggataagtctagtcaaggcatt |
118 |
Q |
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| T |
18362888 |
tatagagatcacaggttatttgcatacaggtttcaccaggaaataacattctctcaagaattcctccagagttaataaggataagtctagtcaaggcatt |
18362789 |
T |
|
| Q |
119 |
tatatgcatggtgtctttgaaatgaggattcaatattcgatggattggatgcatttcacttagccttctttcggtagcaaggataaatggttcaacaact |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18362788 |
tatatgcatggtgtctttgaaatgaggattcaatattcgatggattggatgcatttcacttagccttcttttggtagcaaggataaatggttcaacaact |
18362689 |
T |
|
| Q |
219 |
gcatgtgtgtataacctgaaaaacttttcattgcagaattat |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
18362688 |
gcatgtgtgtataacctgaaaaacttttcattgcagaattat |
18362647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 3019055 - 3018814
Alignment:
| Q |
19 |
tatagagatcacaggttatttgcatacaggtttcaccaggaaataacattctctcaagaatttctccagagttaataaggataagtctagtcaaggcatt |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3019055 |
tatagagatcacaggttatttgcatacaggtttcaccaggaaataacattctctcaagaattcctccagagttaataaggataagtctagtcaaggcatt |
3018956 |
T |
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| Q |
119 |
tatatgcatggtgtctttgaaatgaggattcaatattcgatggattggatgcatttcacttagccttctttcggtagcaaggataaatggttcaacaact |
218 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3018955 |
tatatgcatggtgtctttgaaatgaggactcaatattcgatggattggatgcatttcacttagccttcttttggtagcaaggataaatggttcaacaact |
3018856 |
T |
|
| Q |
219 |
gcatgtgtgtataacctgaaaaacttttcattgcagaattat |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
3018855 |
gcatgtgtgtataacctgaaaaacttttcattgcagaattat |
3018814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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