View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_low_4 (Length: 768)
Name: NF19418_low_4
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 188 - 449
Target Start/End: Complemental strand, 44534306 - 44534045
Alignment:
| Q |
188 |
ctatgatatcacgaaagtgggatcctctactgcttcagatgtgttgtaccatagcaaccgttagatttaaagagaaaaattctcttcaaaatctaaaaat |
287 |
Q |
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| T |
44534306 |
ctatgatctcacgaaactgg-atcctctactgcttcagatatgttgtaccgtagcaaccgttagatttaaagagaaaaattctcttcaaaatctaaaaat |
44534208 |
T |
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| Q |
288 |
ttctacaggtacaacacgatac-gcagatgtagaggatttaggtcaatctttgtgtcttttgtttacatccaatgagaagcttccttatcttgtctcata |
386 |
Q |
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| T |
44534207 |
ttctataggtacaacacgatactgcagatgcagaggatctaggtcaatctttgtgtctgttgtttacatccaatgagacgcttccttatcttgtctcata |
44534108 |
T |
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| Q |
387 |
caactgtgtccattgatgaaagtttatttgttgtcacaacttcataacggctactaacacctc |
449 |
Q |
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| T |
44534107 |
caattgtgtccattgatgaaagtttatttgttgtcacaacttcataacggctactaacacctc |
44534045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 564 - 762
Target Start/End: Complemental strand, 44533930 - 44533732
Alignment:
| Q |
564 |
ccacatcaccctcttcaaatgtagttggaggtctccattgttgttctggctgcaccatcaatggctccatcgtctcatttgacttcatgctatgaaacga |
663 |
Q |
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| T |
44533930 |
ccacatcaccctcttcaaatgtagttggaggtctccattgttgttctggctgcaccatcaatggctccatcgtctcatttgacttcatgctatgaaacga |
44533831 |
T |
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| Q |
664 |
attagaaccaaaaaggttctgtgttttgttcttttctttgtaaatagcttcaagttcattaaaataaggacatgtcttactatcatcacgcctttgctt |
762 |
Q |
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| T |
44533830 |
attagaaccaaaaaggttctgtgttttgttcttttctttgtaaatagcttcaagttcattaaaataaggacatgtcttactatcatcacgcctttgctt |
44533732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 44534490 - 44534354
Alignment:
| Q |
1 |
gaacatacataatgatgctttttcaaatgggaccatgatttnnnnnnnnnnnnntaaattgaatttttatggtccaggtgtttgtggtatgcctttaata |
100 |
Q |
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| T |
44534490 |
gaacatacataatgatgctttttcaaatgggaccatgatttaaaaagaaaaaaataaattgaatttttatggtccaggtgtttgtggtatgcctttaata |
44534391 |
T |
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| Q |
101 |
tatgactattttcagtgacaaagttcaataacatctt |
137 |
Q |
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| T |
44534390 |
tatgactattttcagtgacaaagttcaataacatctt |
44534354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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