View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19418_low_40 (Length: 239)

Name: NF19418_low_40
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19418_low_40
NF19418_low_40
[»] chr6 (5 HSPs)
chr6 (1-223)||(1499640-1499862)
chr6 (126-219)||(25195457-25195550)
chr6 (124-214)||(6896030-6896120)
chr6 (118-191)||(5724751-5724824)
chr6 (170-214)||(6654188-6654232)
[»] chr2 (2 HSPs)
chr2 (123-215)||(33047649-33047741)
chr2 (151-216)||(15928530-15928595)
[»] chr3 (2 HSPs)
chr3 (123-197)||(38022333-38022407)
chr3 (123-219)||(48410905-48411001)
[»] chr4 (6 HSPs)
chr4 (123-219)||(2635059-2635155)
chr4 (119-214)||(21691318-21691413)
chr4 (149-219)||(35064985-35065055)
chr4 (123-191)||(2326932-2327000)
chr4 (123-214)||(33456270-33456361)
chr4 (166-214)||(42152979-42153027)
[»] chr1 (3 HSPs)
chr1 (148-214)||(47892486-47892552)
chr1 (152-214)||(2099784-2099846)
chr1 (172-214)||(37523008-37523050)
[»] scaffold0168 (1 HSPs)
scaffold0168 (118-219)||(31717-31818)
[»] chr5 (5 HSPs)
chr5 (134-218)||(11647989-11648073)
chr5 (148-214)||(25548439-25548505)
chr5 (166-219)||(34250444-34250497)
chr5 (123-179)||(38845644-38845700)
chr5 (123-191)||(39097160-39097228)
[»] chr8 (3 HSPs)
chr8 (168-214)||(12742227-12742273)
chr8 (150-214)||(35525335-35525399)
chr8 (165-217)||(36200227-36200279)
[»] chr7 (1 HSPs)
chr7 (147-217)||(22195784-22195854)
[»] scaffold0314 (1 HSPs)
scaffold0314 (123-191)||(17322-17390)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1499640 - 1499862
Alignment:
Q  1 cgaatatcaaccataatcaacagggtggcagctaaataattcattcattgataaccttaatccgacaactatatggttacaaagatagaattttgtgcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1499640 cgaatatcaaccataatcaacagggtggcagctaaataattcattcattgataaccttaatccgacaactatacggttacaaagatagaattttgtgcat 1499739  T
Q  101 gaatgaaatcaacctcatgtgcatgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgta 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1499740 gaatgaaatcaacctcatgtgtatgtttggtttcacttctattgggaccaaaattaattatgtaagtgtagaattgattatggcatgtttgattgctgta 1499839  T
Q  201 gagtagaattgattatgccatgt 223  Q
    ||||||||||||||||| |||||    
T  1499840 gagtagaattgattatggcatgt 1499862  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 25195550 - 25195457
Alignment:
Q  126 tttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgattatgcc 219  Q
    ||||||| ||||||||  || ||||||||||||| || | ||||| |||||||| || |||||||| ||||| | ||||| |||||||| ||||    
T  25195550 tttggttccacttctagaggaaccaaaattgattctggatgtgtataattgattctgacatgtttggttgctatcgagtataattgattctgcc 25195457  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 6896120 - 6896030
Alignment:
Q  124 tgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 214  Q
    ||||||||| ||||||||  | ||| |||| ||||| || |  |||||||||||||||| |||||||| ||| ||| ||||| ||||||||    
T  6896120 tgtttggttccacttctaaagtgacaaaaaatgattctggagatgtagaattgattatgacatgtttggttgttgtcgagtacaattgatt 6896030  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 5724824 - 5724751
Alignment:
Q  118 tgtgcatgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttg 191  Q
    |||| |||||||||| ||||||||  ||| |||||||| ||| |  |||||||||||||||| || ||||||||    
T  5724824 tgtgtatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctgacatgtttg 5724751  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 6654232 - 6654188
Alignment:
Q  170 agaattgattatggcatgtttgattgctgtagagtagaattgatt 214  Q
    ||||||||||||| |||||||| ||||| | ||||||||||||||    
T  6654232 agaattgattatgtcatgtttggttgctattgagtagaattgatt 6654188  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 33047741 - 33047649
Alignment:
Q  123 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatta 215  Q
    |||||||||||| ||||||  |||||||||||||||| || | |||||||||||||| |  |||||||||||||||  |||||||||||||||    
T  33047741 atgtttggtttcgcttctagagggaccaaaattgattttggaggtgtagaattgattctcacatgtttgattgctgacgagtagaattgatta 33047649  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 15928595 - 15928530
Alignment:
Q  151 aaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgattat 216  Q
    ||||||||| || | |||||||||||||| || |||||||| ||| ||| ||||||||||||||||    
T  15928595 aaattgattctggaggtgtagaattgattttgacatgtttggttgttgttgagtagaattgattat 15928530  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 38022333 - 38022407
Alignment:
Q  123 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgct 197  Q
    |||||||||||||||||||   |||||||| |||||| |  |||||||||||||||| |||||||||||||||||    
T  38022333 atgtttggtttcacttctagaaggaccaaagttgattctagaagtgtagaattgattttggcatgtttgattgct 38022407  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 48411001 - 48410905
Alignment:
Q  123 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgattatgcc 219  Q
    |||||||||| ||||| ||  |||  || |||||||| | ||||||| ||||||||| ||  ||||||||||||| | |||||||||||||| ||||    
T  48411001 atgtttggttacacttttagaggggtcagaattgattctataagtgtggaattgattctgagatgtttgattgctttcgagtagaattgattttgcc 48410905  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 2635059 - 2635155
Alignment:
Q  123 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgattatgcc 219  Q
    |||||||||||||||| ||  |||||||||||||||| |  ||||||| |||||||| || |||||||||||||| |  ||||||| ||||| ||||    
T  2635059 atgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactgattttgcc 2635155  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 21691413 - 21691318
Alignment:
Q  119 gtgcatgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 214  Q
    |||||||||||||| ||||||||  ||||||| |||||||| || | |||||||||||||| || ||| |||| ||| ||| |||||| |||||||    
T  21691413 gtgcatgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgattctgacatatttggttgttgtcgagtagtattgatt 21691318  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 35064985 - 35065055
Alignment:
Q  149 caaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgattatgcc 219  Q
    |||||||||||||| | ||||||||||||||||| ||| |||| ||||| | |||||||||||||| ||||    
T  35064985 caaaattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgattttgcc 35065055  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 2327000 - 2326932
Alignment:
Q  123 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttg 191  Q
    |||||||||||||||| || |||||||| |||| |||||| | || |||||||||||||| ||||||||    
T  2327000 atgtttggtttcacttttagtgggaccataattaattatggaggtatagaattgattatgacatgtttg 2326932  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 33456270 - 33456361
Alignment:
Q  123 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 214  Q
    |||||||||| ||||||||  ||||| | |||||||| || | ||||||||||||||||| ||| |||  ||| ||| || |||||||||||    
T  33456270 atgtttggttccacttctagagggactataattgattttgaatgtgtagaattgattatgacatattttgttggtgtcgactagaattgatt 33456361  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 42153027 - 42152979
Alignment:
Q  166 gtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 214  Q
    |||||||||| ||| || |||||||||||||| | ||||||||||||||    
T  42153027 gtgtagaatttattttgacatgtttgattgctcttgagtagaattgatt 42152979  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 47892552 - 47892486
Alignment:
Q  148 ccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 214  Q
    ||||||||||||||| ||||||||||||||||  | |||||||| ||||| | ||||||||||||||    
T  47892552 ccaaaattgattatggaagtgtagaattgattccgtcatgtttggttgcttttgagtagaattgatt 47892486  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 2099846 - 2099784
Alignment:
Q  152 aattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 214  Q
    |||||||| || | ||||||||||||||||| | |||||||||| ||| ||||||||||||||    
T  2099846 aattgattctggaggtgtagaattgattatgacttgtttgattgatgtcgagtagaattgatt 2099784  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 37523050 - 37523008
Alignment:
Q  172 aattgattatggcatgtttgattgctgtagagtagaattgatt 214  Q
    ||||||||||| |||||||||||||| | ||||||||||||||    
T  37523050 aattgattatgacatgtttgattgctctggagtagaattgatt 37523008  T

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Target: scaffold0168 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 31717 - 31818
Alignment:
Q  118 tgtgcatgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgattatg 217  Q
    |||| |||||||||| ||||||||  | |||||||||||||| |  | |||||||||||||| || |||||||| ||| ||| ||||| |||||||| ||    
T  31717 tgtgtatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgattctg 31816  T
Q  218 cc 219  Q
    ||    
T  31817 cc 31818  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 11647989 - 11648073
Alignment:
Q  134 cacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgattatgc 218  Q
    ||||||||  ||||||| |||||||| ||   ||||| |||||||| || |||||||||||||||| |||||||||| |||||||    
T  11647989 cacttctagagggaccataattgattttggtggtgtataattgattttgacatgtttgattgctgtcgagtagaatttattatgc 11648073  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 25548439 - 25548505
Alignment:
Q  148 ccaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 214  Q
    |||||||||||| || | ||||||||||||||||| |||||||||||||| |  |||| ||||||||    
T  25548439 ccaaaattgattgtggatgtgtagaattgattatgacatgtttgattgcttttaagtaaaattgatt 25548505  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 34250497 - 34250444
Alignment:
Q  166 gtgtagaattgattatggcatgtttgattgctgtagagtagaattgattatgcc 219  Q
    ||||||||||| || || |||||||| || || |||||||||||||||||||||    
T  34250497 gtgtagaattgtttttgacatgtttggtttctctagagtagaattgattatgcc 34250444  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 38845700 - 38845644
Alignment:
Q  123 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgatt 179  Q
    |||||||||| ||||||||  | |||||||||||||| || | ||||||||||||||    
T  38845700 atgtttggttccacttctagagagaccaaaattgattctggaggtgtagaattgatt 38845644  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 39097160 - 39097228
Alignment:
Q  123 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttg 191  Q
    |||||||||||||||| ||  | |||| |||||||||||  | |||||||||||||| || ||||||||    
T  39097160 atgtttggtttcacttttagagagaccgaaattgattatagaggtgtagaattgattttgacatgtttg 39097228  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 12742227 - 12742273
Alignment:
Q  168 gtagaattgattatggcatgtttgattgctgtagagtagaattgatt 214  Q
    |||||||||||||||| ||||||| ||||| | ||||||||||||||    
T  12742227 gtagaattgattatggtatgtttggttgctttcgagtagaattgatt 12742273  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 35525335 - 35525399
Alignment:
Q  150 aaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgatt 214  Q
    |||||||||| || | ||||||| || ||| || |||||||||||| ||| ||||||||||||||    
T  35525335 aaaattgattctgaatgtgtagatttaattctgacatgtttgattgttgtcgagtagaattgatt 35525399  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 36200279 - 36200227
Alignment:
Q  165 agtgtagaattgattatggcatgtttgattgctgtagagtagaattgattatg 217  Q
    |||||||||||||||||| |||||||| ||||||   |||||||||| |||||    
T  36200279 agtgtagaattgattatgacatgtttgcttgctggcaagtagaattgtttatg 36200227  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 22195784 - 22195854
Alignment:
Q  147 accaaaattgattatgtaagtgtagaattgattatggcatgtttgattgctgtagagtagaattgattatg 217  Q
    ||||||||||||| |  | ||||| |||| |||||| |||||||||||  ||| |||||||||||||||||    
T  22195784 accaaaattgattctagaggtgtaaaattaattatgacatgtttgattattgtcgagtagaattgattatg 22195854  T

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Target: scaffold0314 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 17322 - 17390
Alignment:
Q  123 atgtttggtttcacttctattgggaccaaaattgattatgtaagtgtagaattgattatggcatgtttg 191  Q
    |||||||||| ||||||||  |  ||||||||||||| || | ||||||||||||||||| ||| ||||    
T  17322 atgtttggttccacttctagagtaaccaaaattgattctggaggtgtagaattgattatgacatatttg 17390  T

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