View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_low_43 (Length: 219)
Name: NF19418_low_43
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 16908727 - 16908530
Alignment:
| Q |
1 |
ctatttgatatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacactattatggaaagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16908727 |
ctatttgatatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgttgtgactcattgtgggtggaacactattatggaaagt |
16908628 |
T |
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| Q |
101 |
gtaaatgcaggtttaccattggctacttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtggcagt |
198 |
Q |
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| T |
16908627 |
gtaaatgcaggtttaccattggctacttggccattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattggtgtggcagt |
16908530 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 14869932 - 14870129
Alignment:
| Q |
1 |
ctatttgatatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacactattatggaaagt |
100 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
14869932 |
ctatttgatatggggttgggcaccacaactgctgatactagagcatgctgcagttggagcagtggtgactcactgtggctggaacactattatggaaagt |
14870031 |
T |
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| Q |
101 |
gtaaatgcaggtttaccattggctacttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtggcagt |
198 |
Q |
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| T |
14870032 |
gtaaatgcaggtttgtcattggcaacttggccattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattggtgtggcagt |
14870129 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 5994974 - 5994783
Alignment:
| Q |
1 |
ctatttgatatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacactattatggaaagt |
100 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| ||||||| ||| || |||| |||||| | |||| ||||||||| ||||||||| || | |||||| |
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| T |
5994974 |
ctatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagt |
5994875 |
T |
|
| Q |
101 |
gtaaatgcaggtttaccattggctacttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgt |
192 |
Q |
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|| |||| || |||||| | || ||||| |||||||||||||| ||||||||||||| | | | ||||||||||| || |||||||| |
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| T |
5994874 |
gtgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgt |
5994783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 12613769 - 12613833
Alignment:
| Q |
125 |
acttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattgg |
189 |
Q |
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|||||||| |||||||||||||| ||||| |||||| |||| ||||||| ||||| || ||||| |
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| T |
12613769 |
acttggcctttatttgctgaacaattttttcatgagaaattggtggttgaagtgttaaaaattgg |
12613833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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