View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_low_5 (Length: 640)
Name: NF19418_low_5
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Original strand, 1884672 - 1885303
Alignment:
| Q |
1 |
gttggttagtgaaacatcaatcacattcgatgaaacgagcaattgcggtaatagtaatagtagtagtagtggtagcggtagctggattaaaggcggcggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1884672 |
gttggttagtgaaacatcaatcacattcgatgaaacgagcaattgcggtaatagtaatagtagtagtagtggtagcggtagctggattaaaggcggcggt |
1884771 |
T |
|
| Q |
101 |
ggacttcacatgattgtagcaggtggaactagagacgaaacttcaagtcttcaagctaaagaacaaaggatgataattgagagtcttataagcattattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1884772 |
ggacttcacatgattgtagcaggtggaactagagacgaaacttcaagtcttcaagctaaagaacaaaggatgataattgagagtcttataagcattattc |
1884871 |
T |
|
| Q |
201 |
ctcctcagaaggatactgtttcgtgtactttccttcttaggcttctgagaatggcaattatgttaaaggttgcacctgcattggttactgaattagagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1884872 |
ctcctcagaaggatactgtttcgtgtactttccttcttaggcttctgagaatggcaattatgttaaaggttgcacctgcattggttactgaattagagaa |
1884971 |
T |
|
| Q |
301 |
aagggttggaatgcaatttgagcaagctacacttgctgatctattaattccttgttataataaaggagagacaatgatgtatgatgttgatcttgttatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1884972 |
aagggttggaatgcaatttgagcaagctacacttgctgatctattaattccttgttataataaaggagagacaatgatgtatgatgttgatcttgttatg |
1885071 |
T |
|
| Q |
401 |
aggctgcttgagcattttcttgtacaagaagtgactgaaaattctagtccgaaaagacagtcattttctgagaaacatatgggattgggatgtaacctta |
500 |
Q |
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| T |
1885072 |
aggctgcttgagcattttcttgtacaagaagtgactgaaaattctagtccgaaaagacagtcattttctgagaaacatatgggattgggatgtaacctta |
1885171 |
T |
|
| Q |
501 |
atgctaaagcaagagtagcaagacttgttgacagttatcttacagaggtttcaagagatagaaacctttcattgacaaagtttcaggtacttgctgaagc |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1885172 |
atgctaaagcaagagtagcaagacttgttgacagttatcttacagaggtttcaagagatagaaacctttcattgacaaagtttcaggtacttgctgaagc |
1885271 |
T |
|
| Q |
601 |
tttgcctgaatcagctagaacctgtgatgatg |
632 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
1885272 |
tttgcctgaatcagctagaacctgtgatgatg |
1885303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 277 - 619
Target Start/End: Complemental strand, 37214206 - 37213870
Alignment:
| Q |
277 |
tgcattggttactgaattagagaaaagggttggaatgcaatttgagcaagctacacttgctgatctattaattccttgttataataaaggagagacaatg |
376 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| ||| | ||| | || || ||| |
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| T |
37214206 |
tgcattgattactgatttagagaaaagggttggaatgcagtttgagcaagctacactttctgatcttctaattccttgctatgagaaaagtgaaactatg |
37214107 |
T |
|
| Q |
377 |
atgtatgatgttgatcttgttatgaggctgcttgagcattttcttgtacaagaagtgactgaaaattctagtccgaaaagacagtcattttctgagaaac |
476 |
Q |
| |
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|||||||| ||||||||| |||| || | |||||||||||||| |||||| |||||| || |||||| | ||||| || ||||||| | |
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| T |
37214106 |
---tatgatgtggatcttgttcagaggttgttggagcattttcttgttcaagaacaaactgaaggttatagtccaagtagacaatccctttctgatcaca |
37214010 |
T |
|
| Q |
477 |
atatgggattgggatgtaaccttaatgctaaagcaagagtagcaagacttgttgacagttatcttacagaggtttcaagagatagaaacctttcattgac |
576 |
Q |
| |
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| | | ||||| ||||||| ||||| || |||||||| ||||| ||||| |||||||||||||||||||| || ||||||||||||||||||| ||| |
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| T |
37214009 |
agaatg---tgggaagtaacctgaatgccaaggcaagagtggcaaggcttgtggacagttatcttacagaggtatctagagatagaaacctttcatcgac |
37213913 |
T |
|
| Q |
577 |
aaagtttcaggtacttgctgaagctttgcctgaatcagctaga |
619 |
Q |
| |
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|||||||||||| ||||| |||||||| ||||| ||||||||| |
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| T |
37213912 |
aaagtttcaggttcttgcagaagctttacctgagtcagctaga |
37213870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 124 - 270
Target Start/End: Complemental strand, 37214453 - 37214307
Alignment:
| Q |
124 |
tggaactagagacgaaacttcaagtcttcaagctaaagaacaaaggatgataattgagagtcttataagcattattcctcctcagaaggatactgtttcg |
223 |
Q |
| |
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|||||||||||| |||||||||| ||||||| | || || |||| |||| | ||||||||||| || ||||| ||||| || ||||| || | ||| ||| |
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| T |
37214453 |
tggaactagagatgaaacttcaactcttcaaaccaaggatcaaaagatggttattgagagtctcatcagcataattccaccacagaaagacagtgtctcg |
37214354 |
T |
|
| Q |
224 |
tgtactttccttcttaggcttctgagaatggcaattatgttaaaggt |
270 |
Q |
| |
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|||| |||||||| ||||||||||||||||||| ||||||||||| |
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| T |
37214353 |
tgtagcttccttctcaggcttctgagaatggcaaacatgttaaaggt |
37214307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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