View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19418_low_8 (Length: 524)
Name: NF19418_low_8
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19418_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 271 - 509
Target Start/End: Original strand, 31114681 - 31114916
Alignment:
| Q |
271 |
ataaatgggttgaagcatcaaaacgacgtcatctttatctatccttggttgatgtccattccatttggcacctacgtaccaccaccatttcctactggaa |
370 |
Q |
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| T |
31114681 |
ataaatgggttgaagcatcaaaacgacgtcatctttatctatccttggttgatgtccattccatttggcacctacgtacca---ccatttcctactgcaa |
31114777 |
T |
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| Q |
371 |
tacacttttggttttgagactgatgaatatacatgtagtagctatgtttcattgttctgttgaacttccttttctcaaaaccctacggttgtgtgatatt |
470 |
Q |
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| T |
31114778 |
tacacttttggttttgagactgatgaatatacatgtagtagctatgtttcattgttctgttgaacttccttttctcaaaaccctacggttgtgtgatatt |
31114877 |
T |
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| Q |
471 |
tatttcgaagttgaggaagatttcacgaaacttctctct |
509 |
Q |
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| T |
31114878 |
tatttcgaagttgaggaagatttcacgaaacttctctct |
31114916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 31114472 - 31114667
Alignment:
| Q |
9 |
catcatcaacaacttcctagacgagatggttacccacattctgtcttttctcccaatcaaataagcttt-agaaccaatgtccattcaaagaggtggatc |
107 |
Q |
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| T |
31114472 |
catcatcaacaacttcctagacgagatggttacccacattctgtcttttctcccaatcaaataagcttttagaaccaatgtcctttctaagagttgggtc |
31114571 |
T |
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| Q |
108 |
ccattatgccactcactctccattatctgcattgatgatagaagcttgtatcccataaacacagtgaactgggttcactttggacgattcatggac |
203 |
Q |
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| T |
31114572 |
ccattatgccactcactctccattatctgcattgatgatagaagcttgtatcccagaaacacagtgaactgggttcactttggtcgattcatggac |
31114667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 31088499 - 31088611
Alignment:
| Q |
118 |
actcactctccattatctgcattgatgatagaagcttgtatcccataaacacagtgaactgggttcactttggacgattcatggacgcaattatgttcaa |
217 |
Q |
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| T |
31088499 |
actcactctctgttgtccgctttgatgatataagcttctatcaaagaaacacagagaagtgggttcactttcgttgattcgtggatacaattatgttcaa |
31088598 |
T |
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| Q |
218 |
cccccactctcaa |
230 |
Q |
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| T |
31088599 |
cccacactctcaa |
31088611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 415 - 510
Target Start/End: Original strand, 31088793 - 31088888
Alignment:
| Q |
415 |
tgtttcattgttctgttgaacttccttttctcaaaaccctacggttgtgtgatatttatttcgaagttgaggaagatttcacgaaacttctctctg |
510 |
Q |
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| T |
31088793 |
tgtttcattgttatgtagatcttcctatgctcaaaactctacaattgtttaatatttatttcgaagttgggaaggatttcatgaaacttatctctg |
31088888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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