View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19418_low_9 (Length: 506)

Name: NF19418_low_9
Description: NF19418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19418_low_9
NF19418_low_9
[»] chr2 (8 HSPs)
chr2 (9-490)||(821279-821760)
chr2 (231-454)||(973652-973875)
chr2 (318-454)||(957809-957945)
chr2 (220-444)||(410469-410693)
chr2 (310-444)||(965166-965300)
chr2 (306-448)||(1400003-1400142)
chr2 (306-448)||(1403721-1403863)
chr2 (122-199)||(957656-957733)
[»] chr3 (1 HSPs)
chr3 (115-456)||(45810009-45810349)
[»] chr7 (3 HSPs)
chr7 (225-454)||(12105489-12105718)
chr7 (213-428)||(28449405-28449617)
chr7 (396-449)||(1459135-1459188)
[»] chr6 (2 HSPs)
chr6 (199-444)||(10116363-10116604)
chr6 (9-68)||(10114623-10114682)
[»] chr1 (2 HSPs)
chr1 (218-365)||(48675085-48675232)
chr1 (199-348)||(22068491-22068639)
[»] chr5 (2 HSPs)
chr5 (304-364)||(36199394-36199454)
chr5 (190-242)||(36199516-36199569)


Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 9 - 490
Target Start/End: Complemental strand, 821760 - 821279
Alignment:
Q  9 tagaaatagaagagtaatgaaaagatttcactactcataagtcacttgcattaaataaaatatttcttaatttgtgcaccgagacaaagtttaggacgac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821760 tagaaatagaagagtaatgaaaagatttcactactcataagtcacttgcattaaataaaatatttcttaatttgtgcaccgagacaaagtttaggacgac 821661  T
Q  109 tttcataacagcacatatttcatcaaaccaccaaatcgaacaatttcatggtagaagaaaatggaacaaatgagagaataggaaaaataatacttacata 208  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821660 tttcataacagcacatatttcataaaaccaccaaatcgaacagtttcatggtagaagaaaatggaacaaatgagagaataggaaaaataatacttacata 821561  T
Q  209 atcatatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctcca 308  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  821560 atcgtatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcagattgtttattgttgctcca 821461  T
Q  309 gattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821460 gattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtg 821361  T
Q  409 caagttgtaaggtttaatgaaacgcaacttggaacagatttcggatagagccaatagtgcattctaatgttgccaattaact 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821360 caagttgtaaggtttaatgaaacgcaacttggaacagatttcggatagagccaatagtgcattctaatgttgccaattaact 821279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 231 - 454
Target Start/End: Original strand, 973652 - 973875
Alignment:
Q  231 tgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagattgtcatagtttctaaaact 330  Q
    |||||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||| || ||||| |||||||||||||| ||||||||| |||||||    
T  973652 tgaaagctgacatgttgcagaagcctttgggcatggagataattgactttctatatcagatcgtttactgttgctccagattttcatagtttgtaaaact 973751  T
Q  331 ctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaaggtttaatgaaa 430  Q
    || || |||| |||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||| |||||||||||||||||||||| ||| ||    
T  973752 cttgcgttctccagaataaatcttgctaacataatgtgattacgttgttggcctgcatatgcaaagtcccacatagtgcaagttgtaaggtttgatgtaa 973851  T
Q  431 cgcaacttggaacagatttcggat 454  Q
      |||||||||||| |||| ||||    
T  973852 gacaacttggaacaaattttggat 973875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 318 - 454
Target Start/End: Original strand, 957809 - 957945
Alignment:
Q  318 agtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaagttgta 417  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  957809 agtttctaaaactctcgcattcttcagaataaataatgctaaaataagatgattactttgttggcctgcaagtgcaaagtcccgcatagtgcaagttgta 957908  T
Q  418 aggtttaatgaaacgcaacttggaacagatttcggat 454  Q
    ||||||||||||| |||||||||||| ||||| ||||    
T  957909 aggtttaatgaaaggcaacttggaactgatttaggat 957945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 220 - 444
Target Start/End: Complemental strand, 410693 - 410469
Alignment:
Q  220 tatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagattgtcatag 319  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||  |||||| | ||||||| || | | ||||| ||||||| | |||| |||||||    
T  410693 tatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatag 410594  T
Q  320 tttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaag 419  Q
    ||  ||||||||| |||||||| ||||||||| |||||||||||||||||  |  |||| ||||||||| ||| |||||||| |||||||||||||||||    
T  410593 ttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaatagtgcaagttgtaag 410494  T
Q  420 gtttaatgaaacgcaacttggaaca 444  Q
    |||||| |||| ||||  |||||||    
T  410493 gtttaacgaaaagcaaggtggaaca 410469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 310 - 444
Target Start/End: Original strand, 965166 - 965300
Alignment:
Q  310 attgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgc 409  Q
    |||| |||||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||| |||||||||||||  ||||||||||| ||||||||    
T  965166 attgacatagtttctaaaactcttgcattctccagaataaatcttgctagcataatgtgattacgttgttggcctgcatatgcaaagtcccacatagtgc 965265  T
Q  410 aagttgtaaggtttaatgaaacgcaacttggaaca 444  Q
    |||||||||||||| ||| ||  ||||||||||||    
T  965266 aagttgtaaggtttgatgtaagacaacttggaaca 965300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 306 - 448
Target Start/End: Complemental strand, 1400142 - 1400003
Alignment:
Q  306 ccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcata 405  Q
    |||||||| |||||||||||||||||| ||||||| |||||||||  |||||||||||||| |||||| |||||||||| ||    ||||||||||||||    
T  1400142 ccagattggcatagtttctaaaactcttgcattctgcagaataaaccttgctaacataatgcgattacgttgttggccttca---tcaaagtcccgcata 1400046  T
Q  406 gtgcaagttgtaaggtttaatgaaacgcaacttggaacagatt 448  Q
     ||||||||||||||||||||||||  ||||||||||||||||    
T  1400045 ttgcaagttgtaaggtttaatgaaagacaacttggaacagatt 1400003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 306 - 448
Target Start/End: Complemental strand, 1403863 - 1403721
Alignment:
Q  306 ccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcata 405  Q
    |||||||| |||||||||||||||||| ||||| | |||||||||  |||||||||||||| ||||||  |||||| || |||   ||||||||||||||    
T  1403863 ccagattgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataatgcgattacggtgttggtctacaacaacaaagtcccgcata 1403764  T
Q  406 gtgcaagttgtaaggtttaatgaaacgcaacttggaacagatt 448  Q
     |||||||||||||||||||||||| |||||||||||| ||||    
T  1403763 ttgcaagttgtaaggtttaatgaaaggcaacttggaactgatt 1403721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 957656 - 957733
Alignment:
Q  122 catatttcatcaaaccaccaaatcgaacaatttcatggtagaagaaaatggaacaaatgagagaataggaaaaataat 199  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||  |||| |||||| || |||||||  ||||||||    
T  957656 catagttcatcaaaccactaaatccaacaatttcatggtagaagctaatgaaacaaaagacagaatagagaaaataat 957733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 7e-84; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 115 - 456
Target Start/End: Original strand, 45810009 - 45810349
Alignment:
Q  115 aacagcacatatttcatcaaaccaccaaatcgaacaatttcatggtagaagaaaatggaacaaatgagagaataggaaaaataatacttacataatcata 214  Q
    ||||||||| | ||||||||||  ||||||| |||||||||| ||||||||  |||| |||||| ||||||||||  |||||| |||||||||| |||||    
T  45810009 aacagcacacagttcatcaaacagccaaatccaacaatttcaaggtagaagctaatgaaacaaaggagagaatagagaaaatactacttacata-tcata 45810107  T
Q  215 tatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagattgt 314  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||| |  ||||||||| | |  ||||  || ||| ||| |||||    
T  45810108 tatgttatcaataaattgaaagttgacattttgcagaagcccttggacatgaagataatagtttttctattttagaccgttttctgctgcaccaaattgt 45810207  T
Q  315 catagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaagtt 414  Q
    |||||||||||||||| | |||||||||||||||||  ||||||||||||  ||||||| ||||  |||||||| ||||||||||||||||||||||||     
T  45810208 catagtttctaaaacttttgcattcttcagaataaaccttgctaacataacatgattacgttgtaagcctgcaaatgcaaagtcccgcatagtgcaagtc 45810307  T
Q  415 gtaaggtttaatgaaacgcaacttggaacagatttcggatag 456  Q
    || ||||||||||||| |||| ||||||||||||| ||||||    
T  45810308 gtgaggtttaatgaaaggcaagttggaacagattttggatag 45810349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 225 - 454
Target Start/End: Complemental strand, 12105718 - 12105489
Alignment:
Q  225 ataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagattgtcatagtttct 324  Q
    ||||| |||||||||||||||||||||||| ||||  || |  | |||||| |||||||||||| | |||||   |  || |||||||| |||| |||||    
T  12105718 ataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagactgtttcccgaagcaccagattgacatattttct 12105619  T
Q  325 aaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaaggttta 424  Q
    |||||| | | |||||||||||||||| |||||||||||||||||| ||  ||| ||||| ||| ||||||||| || || || |||||| ||||||||     
T  12105618 aaaactgttgaattcttcagaataaattttgctaacataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtacaagttctaaggtttg 12105519  T
Q  425 atgaaacgcaacttggaacagatttcggat 454  Q
    |||||| ||||| |||||||||||| ||||    
T  12105518 atgaaaggcaacctggaacagattttggat 12105489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 213 - 428
Target Start/End: Original strand, 28449405 - 28449617
Alignment:
Q  213 tatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagatt 312  Q
    |||| |||||||||||| |||||||||||| ||||  || |||||||| ||||  ||||||   |||||||||| |  |||||  || |  ||||| ||     
T  28449405 tatacgttatcaataaactgaaagttgacaagttgtggatgcccttggacatgaggataattccctttctatttgaggttgttctttatcactccatatc 28449504  T
Q  313 gtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaag 412  Q
     |||| |||| ||||||||| ||||| || |||||| || |||||| |||||||| |||   |||| || || ||| |||||||||||| ||||||||||    
T  28449505 atcatggtttgtaaaactcttgcattattaagaatatatcttgctagcataatgtcatt---ttgtaggtctacaaatgcaaagtcccgaatagtgcaag 28449601  T
Q  413 ttgtaaggtttaatga 428  Q
    ||||||| | ||||||    
T  28449602 ttgtaagatgtaatga 28449617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 449
Target Start/End: Original strand, 1459135 - 1459188
Alignment:
Q  396 gtcccgcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagattt 449  Q
    |||||||| |||||||||||||||||||||| ||| ||||  ||||||||||||    
T  1459135 gtcccgcaaagtgcaagttgtaaggtttaataaaaggcaagatggaacagattt 1459188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 199 - 444
Target Start/End: Original strand, 10116363 - 10116604
Alignment:
Q  199 tacttacataatcatatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttat 298  Q
    |||||||||||||||||||||| | |||    |||||||| |||||||| |||||||||||| ||||  |||||    |||||||||| | |  ||||      
T  10116363 tacttacataatcatatatgtttttaat----tgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagaccgtttcc 10116458  T
Q  299 tgttgctccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtc 398  Q
     |   | |||||||| ||||||||||||||||||||||||||  ||||||||  | |||| ||||||||||| ||| ||| |||||| || | |||| ||    
T  10116459 cgcaacaccagattgacatagtttctaaaactctcgcattctcaagaataaacctagctagcataatgtgataacactgtaggcctgaaaattcaaattc 10116558  T
Q  399 ccgcatagtgcaagttgtaaggtttaatgaaacgcaacttggaaca 444  Q
    ||||||||| ||||||||||||||| ||||||  |||| |||||||    
T  10116559 ccgcatagtacaagttgtaaggtttgatgaaagacaacctggaaca 10116604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 10114623 - 10114682
Alignment:
Q  9 tagaaatagaagagtaatgaaaagatttcactactcataagtcacttgcattaaataaaa 68  Q
    |||||||||||||| | ||||||||||||||||||||||||||  |||||||||| ||||    
T  10114623 tagaaatagaagaggagtgaaaagatttcactactcataagtcttttgcattaaaaaaaa 10114682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 218 - 365
Target Start/End: Original strand, 48675085 - 48675232
Alignment:
Q  218 gttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttattgttgctccagattgtcat 317  Q
    |||||||||||| ||||||||||||||||||||| |||||||| ||||  ||||||   |||||||||| |  ||| |  |||| |||||| ||||||||    
T  48675085 gttatcaataaactgaaagttgacatgttgcagaggcccttggacatgaggataattccctttctatttgaggttggtccttgtcgctccatattgtcat 48675184  T
Q  318 agtttctaaaactctcgcattcttcagaataaatattgctaacataat 365  Q
    ||||| ||||||| | ||||| || |||||| || |||||||||||||    
T  48675185 agtttgtaaaacttttgcattatttagaatatatcttgctaacataat 48675232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 348
Target Start/End: Complemental strand, 22068639 - 22068491
Alignment:
Q  199 tacttacataatcatatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcaaattgtttat 298  Q
    |||||||||| || || ||| ||||| |||| | |||||| |||||||| ||||||| ||||||||| ||| |||   ||||||||||||  ||||| |     
T  22068639 tacttacatagtc-taaatgctatcactaaactaaaagttcacatgttgtagaagcctttgggcatgcagacaattttctttctatttcaggttgttcac 22068541  T
Q  299 tgttgctccagattgtcatagtttctaaaactctcgcattcttcagaata 348  Q
    |  ||||||| ||| ||||  ||||||||  ||||| |||||||| ||||    
T  22068540 ttctgctccaaattatcatgatttctaaatttctcgaattcttcaaaata 22068491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 36199454 - 36199394
Alignment:
Q  304 ctccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataa 364  Q
    ||||| ||||||||||||| ||||||||| ||||| || |||||| || ||||||||||||    
T  36199454 ctccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 36199394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 36199569 - 36199516
Alignment:
Q  190 gaaaaataatacttacata-atcatatatgttatcaataaaatgaaagttgaca 242  Q
    ||||| || |||||||||| ||| ||||||||||||||||| ||||||||||||    
T  36199569 gaaaactactacttacatatatcttatatgttatcaataaactgaaagttgaca 36199516  T

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