View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19419_high_5 (Length: 237)
Name: NF19419_high_5
Description: NF19419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19419_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 41708364 - 41708294
Alignment:
| Q |
155 |
aagagggaccgctatcccctaaaaactagcgagacgatcggttggaagaaccaatcttaaaccctttgcta |
225 |
Q |
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| T |
41708364 |
aagagggactgctatcctctaaaaactagtgagacgatctgttggaagaaccaatcttaaatcctttgcta |
41708294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 41708498 - 41708447
Alignment:
| Q |
18 |
agagaggtttcccactgcacaatcctaatcatattaatagaaagatgaaagtat |
71 |
Q |
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| T |
41708498 |
agagaggttttcca--gcacaaccctaatcatattaatagaaagatgaaagtat |
41708447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 9744202 - 9744272
Alignment:
| Q |
155 |
aagagggaccgctatcccctaaaaactagcgagacgatcggttggaagaaccaatcttaaaccctttgcta |
225 |
Q |
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| T |
9744202 |
aagagggaccgcaatcccttaaaaactagtgaggcgatcggttggaagaaccaaccttgaaccctttgcta |
9744272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 16420756 - 16420686
Alignment:
| Q |
155 |
aagagggaccgctatcccctaaaaactagcgagacgatcggttggaagaaccaatcttaaaccctttgcta |
225 |
Q |
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| T |
16420756 |
aagagggaccactatcccttaaaaactagcgaggcgctcagttggaagaaccaacctcgaaccctttgcta |
16420686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 28082253 - 28082204
Alignment:
| Q |
155 |
aagagggaccgctatcccctaaaaactagcgagacgatcggttggaagaa |
204 |
Q |
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| T |
28082253 |
aagagggaccgctatcccctaaaaactagcgaggcgatcagtttgaagaa |
28082204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 24538822 - 24538892
Alignment:
| Q |
155 |
aagagggaccgctatcccctaaaaactagcgagacgatcggttggaagaaccaatcttaaaccctttgcta |
225 |
Q |
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| T |
24538822 |
aagatggaccactatctcttaaaaactaacgaggcgttcggttggaagaaccaaccttgaaccctttgcta |
24538892 |
T |
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