View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19419_low_2 (Length: 535)

Name: NF19419_low_2
Description: NF19419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19419_low_2
NF19419_low_2
[»] chr4 (4 HSPs)
chr4 (1-229)||(47547256-47547486)
chr4 (231-475)||(47547737-47547988)
chr4 (416-496)||(34747612-34747693)
chr4 (231-270)||(31198762-31198801)
[»] chr5 (1 HSPs)
chr5 (411-507)||(7434264-7434360)
[»] chr2 (2 HSPs)
chr2 (411-508)||(37202430-37202528)
chr2 (413-473)||(45139211-45139271)
[»] chr1 (3 HSPs)
chr1 (411-508)||(14588332-14588429)
chr1 (411-489)||(17712674-17712752)
chr1 (411-494)||(46572343-46572426)
[»] chr3 (1 HSPs)
chr3 (411-484)||(43821090-43821163)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 47547256 - 47547486
Alignment:
Q  1 tggaacctaaaacttggcatcaatgctacctaaatttaacttgtgattatgtatgaattacttcctggattgctatttataaatttagtcacaacaagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47547256 tggaacctaaaacttggcatcaatgctacctaaatttaacttgtgattatgtatgaattacttcctggattgctatttataaatttagtcacaacaagaa 47547355  T
Q  101 gttgttgaaatttttagcaacaat--tgtgataattgnnnnnnnnnnnnnnnnggactttggtccaccattcagacaagagctatgaagatttcctttta 198  Q
    |||||||||||||||||||| |||  ||||||| |||                ||||||||||| |||||||||||||||||||||||||||||||||||    
T  47547356 gttgttgaaatttttagcaagaattgtgtgatacttggaaaaagaaaagaaaaggactttggtctaccattcagacaagagctatgaagatttcctttta 47547455  T
Q  199 agccctctcatatctcttttggcctcctcaa 229  Q
    ||||| |||||||||||||||||||||||||    
T  47547456 agcccactcatatctcttttggcctcctcaa 47547486  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 231 - 475
Target Start/End: Original strand, 47547737 - 47547988
Alignment:
Q  231 agataactatcggatgttcattttcaaaaatttattttgtccctcccataaataaatacttgattattgcccatttaa-------tcnnnnnnnnacata 323  Q
    |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||       |         |||||    
T  47547737 agatgactatcggatgttcattttaaaaaatttattttgtacctcccataaataaatacttgattattgcccatttaatatatatttttttttttacata 47547836  T
Q  324 acaaacgaacatcatccaattgagtgcagattgacactatttgttctatcaaatgtgatgnnnnnnnnnnnnnnnnnnnnnnnntcacaagatttagaag 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||                        ||||||||||||||||    
T  47547837 acaaacgaacatcatccaattgagtgcagattgacactatttgttctattaattgtgatgaaaacgcaaaaaatcgctcaaaaatcacaagatttagaag 47547936  T
Q  424 catattcaagtttagtgcaaaataagaaataactagttaaaaactgcaatct 475  Q
    |||||||||||| ||||||| ||||||| |||||||||||||||||||||||    
T  47547937 catattcaagttgagtgcaatataagaagtaactagttaaaaactgcaatct 47547988  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 34747612 - 34747693
Alignment:
Q  416 tttagaagcatattcaagtttagtgcaaaataagaaataactagttaaaaactgcaatc-tcgtttatataatgagtattcc 496  Q
    |||| ||||||||||||||| | ||||||||| |||||||||  ||||||||| ||| | | |||||||||| |||||||||    
T  34747612 tttataagcatattcaagttgaatgcaaaataggaaataactgcttaaaaactacaaccttggtttatataaggagtattcc 34747693  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 270
Target Start/End: Original strand, 31198762 - 31198801
Alignment:
Q  231 agataactatcggatgttcattttcaaaaatttattttgt 270  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  31198762 agataactatcggatgttcattttaaaaaaattattttgt 31198801  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 411 - 507
Target Start/End: Original strand, 7434264 - 7434360
Alignment:
Q  411 caagatttagaagcatattcaagtttagtgcaaaataagaaataactagttaaaaactgcaatctcgtttatataatgagtattcctacagttatct 507  Q
    |||| ||||||||||||||| |||| ||| |||||||||||||||||  |||| ||||| ||  | |||||||||||||||||||||  ||||||||    
T  7434264 caaggtttagaagcatattcgagttcagtacaaaataagaaataactgcttaagaactgtaagttggtttatataatgagtattcctgtagttatct 7434360  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 508
Target Start/End: Original strand, 37202430 - 37202528
Alignment:
Q  411 caagatttagaagcatattcaagtttagtgcaaaataagaaataactagttaaaaactgcaatctcgtttatataatgagta-ttcctacagttatcta 508  Q
    |||| ||| |||| ||||| ||||| |||||||||||  ||||||||| ||||||||| |||||| ||||||||||||| || ||||| ||||||||||    
T  37202430 caaggttttgaagtatattgaagttgagtgcaaaatagaaaataactacttaaaaactacaatctagtttatataatgaatatttcctgcagttatcta 37202528  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 45139271 - 45139211
Alignment:
Q  413 agatttagaagcatattcaagtttagtgcaaaataagaaataactagttaaaaactgcaat 473  Q
    ||||||||||| ||||| ||||| ||||||||||| |||||||||  ||||||||| ||||    
T  45139271 agatttagaagaatatttaagttgagtgcaaaataggaaataacttcttaaaaactacaat 45139211  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 508
Target Start/End: Original strand, 14588332 - 14588429
Alignment:
Q  411 caagatttagaagcatattcaagtttagtgcaaaataagaaataactagttaaaaactgcaatctcgtttatataatgagtattcctacagttatcta 508  Q
    |||| |||| ||||||||||||||| ||||||||| |  |||| |||  |||||||||||||| |  |||||||||||| |||||| |||||||||||    
T  14588332 caagttttaaaagcatattcaagttgagtgcaaaacagaaaatgactgcttaaaaactgcaatttgatttatataatgaatattccaacagttatcta 14588429  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 489
Target Start/End: Original strand, 17712674 - 17712752
Alignment:
Q  411 caagatttagaagcatattcaagtttagtgcaaaataagaaataactagttaaaaactgcaatctcgtttatataatga 489  Q
    |||||||||||||||||||||| || || | ||||||  ||| ||||  ||||||||||||||||  ||||||||||||    
T  17712674 caagatttagaagcatattcaaattgagcggaaaatagaaaacaactgcttaaaaactgcaatctgatttatataatga 17712752  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 494
Target Start/End: Original strand, 46572343 - 46572426
Alignment:
Q  411 caagatttagaagcatattcaagttt-agtgcaaaataagaaataactagttaaaaactgcaatctcgtttatataatgagtatt 494  Q
    |||| ||||||||||| || |||||| |||| || ||||||||||| |  ||||||||| ||||||  |||||||||||||||||    
T  46572343 caaggtttagaagcatgtt-aagtttgagtgtaatataagaaataattgtttaaaaactacaatctaatttatataatgagtatt 46572426  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 484
Target Start/End: Original strand, 43821090 - 43821163
Alignment:
Q  411 caagatttagaagcatattcaagtttagtgcaaaataagaaataactagttaaaaactgcaatctcgtttatat 484  Q
    |||| |||||||||||||||||||| |||||||||||  |||||||   |||||||||||||| | ||||||||    
T  43821090 caaggtttagaagcatattcaagttgagtgcaaaatagaaaataaccgcttaaaaactgcaatatggtttatat 43821163  T

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