View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19419_low_4 (Length: 250)

Name: NF19419_low_4
Description: NF19419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19419_low_4
NF19419_low_4
[»] chr5 (16 HSPs)
chr5 (74-250)||(40937933-40938113)
chr5 (13-72)||(40938177-40938236)
chr5 (175-250)||(42199304-42199379)
chr5 (175-250)||(31636109-31636184)
chr5 (80-135)||(39322153-39322207)
chr5 (80-151)||(28005660-28005730)
chr5 (105-139)||(14749432-14749466)
chr5 (105-142)||(5305761-5305798)
chr5 (105-142)||(6859503-6859540)
chr5 (175-216)||(14667823-14667864)
chr5 (105-142)||(15489615-15489652)
chr5 (106-151)||(18698907-18698952)
chr5 (79-107)||(2066165-2066193)
chr5 (81-109)||(7678644-7678672)
chr5 (81-109)||(14667937-14667965)
chr5 (178-250)||(28676613-28676685)
[»] chr1 (21 HSPs)
chr1 (81-221)||(5338771-5338907)
chr1 (80-142)||(13827667-13827730)
chr1 (79-129)||(109079-109129)
chr1 (82-216)||(43375687-43375817)
chr1 (175-250)||(40416389-40416464)
chr1 (80-142)||(17233858-17233919)
chr1 (175-221)||(17640242-17640288)
chr1 (105-151)||(38868995-38869041)
chr1 (105-151)||(44008692-44008738)
chr1 (175-216)||(19908228-19908269)
chr1 (107-151)||(6025718-6025762)
chr1 (79-127)||(17640153-17640200)
chr1 (80-143)||(37591127-37591190)
chr1 (175-250)||(43423737-43423812)
chr1 (175-250)||(48431595-48431670)
chr1 (105-151)||(30834100-30834146)
chr1 (174-212)||(35828738-35828776)
chr1 (105-151)||(42501221-42501267)
chr1 (105-151)||(52442651-52442697)
chr1 (177-221)||(10569258-10569302)
chr1 (80-108)||(30834064-30834092)
[»] chr7 (17 HSPs)
chr7 (105-250)||(38135336-38135476)
chr7 (107-215)||(48202827-48202931)
chr7 (81-159)||(28542032-28542109)
chr7 (175-250)||(12966040-12966115)
chr7 (105-221)||(28628056-28628168)
chr7 (175-250)||(42187488-42187563)
chr7 (81-142)||(36101865-36101925)
chr7 (80-109)||(30144941-30144970)
chr7 (105-142)||(30814794-30814831)
chr7 (105-142)||(45601598-45601635)
chr7 (105-142)||(47848796-47848833)
chr7 (81-109)||(1569182-1569210)
chr7 (81-109)||(24549776-24549804)
chr7 (82-158)||(27893652-27893727)
chr7 (105-141)||(28562489-28562525)
chr7 (81-109)||(30664734-30664762)
chr7 (81-109)||(45601642-45601670)
[»] chr4 (27 HSPs)
chr4 (81-142)||(31339657-31339718)
chr4 (175-250)||(54470225-54470300)
chr4 (191-238)||(33191053-33191100)
chr4 (175-221)||(28497536-28497582)
chr4 (105-142)||(49987530-49987567)
chr4 (81-133)||(31459137-31459188)
chr4 (77-109)||(44047455-44047487)
chr4 (105-149)||(44719487-44719531)
chr4 (191-238)||(8286461-8286508)
chr4 (175-250)||(20605215-20605290)
chr4 (191-238)||(33227239-33227286)
chr4 (175-242)||(47372677-47372744)
chr4 (105-142)||(7682033-7682070)
chr4 (105-142)||(13805388-13805425)
chr4 (80-109)||(22420804-22420833)
chr4 (117-158)||(29398924-29398965)
chr4 (178-215)||(31339589-31339626)
chr4 (80-109)||(41192227-41192256)
chr4 (105-142)||(45569132-45569169)
chr4 (80-109)||(47147539-47147568)
chr4 (109-142)||(53540412-53540445)
chr4 (81-109)||(25574990-25575018)
chr4 (81-109)||(26024938-26024966)
chr4 (81-109)||(26025007-26025035)
chr4 (105-141)||(35690394-35690430)
chr4 (111-143)||(47611848-47611880)
chr4 (81-109)||(50680906-50680934)
[»] chr2 (9 HSPs)
chr2 (175-250)||(23714450-23714525)
chr2 (175-250)||(24102122-24102197)
chr2 (84-142)||(13240854-13240911)
chr2 (175-250)||(13240934-13241009)
chr2 (180-242)||(9556563-9556625)
chr2 (105-216)||(18958963-18959070)
chr2 (105-151)||(26784463-26784509)
chr2 (81-142)||(11412842-11412901)
chr2 (106-142)||(45436964-45437000)
[»] chr8 (16 HSPs)
chr8 (105-205)||(38178383-38178479)
chr8 (105-156)||(45512618-45512669)
chr8 (105-142)||(35643729-35643766)
chr8 (105-149)||(4011198-4011242)
chr8 (105-221)||(29520697-29520808)
chr8 (82-156)||(41971879-41971952)
chr8 (80-109)||(1549478-1549507)
chr8 (105-142)||(2216410-2216447)
chr8 (80-109)||(10079994-10080023)
chr8 (80-109)||(38483056-38483085)
chr8 (177-221)||(79090-79134)
chr8 (90-250)||(9695649-9695804)
chr8 (81-109)||(30783130-30783158)
chr8 (80-108)||(39388950-39388978)
chr8 (105-142)||(41444463-41444502)
chr8 (105-141)||(45419358-45419394)
[»] chr6 (7 HSPs)
chr6 (175-250)||(2079358-2079433)
chr6 (105-142)||(34628-34665)
chr6 (175-220)||(21870254-21870299)
chr6 (80-141)||(3963922-3963984)
chr6 (175-221)||(6293575-6293621)
chr6 (105-142)||(1747764-1747801)
chr6 (105-141)||(9593831-9593867)
[»] chr3 (16 HSPs)
chr3 (175-250)||(21200566-21200641)
chr3 (177-248)||(36820152-36820223)
chr3 (105-151)||(31261065-31261111)
chr3 (105-141)||(54365098-54365134)
chr3 (105-221)||(39600804-39600916)
chr3 (81-135)||(19758028-19758081)
chr3 (81-142)||(29475810-29475880)
chr3 (176-214)||(30572988-30573026)
chr3 (79-109)||(41452826-41452856)
chr3 (175-216)||(2968263-2968304)
chr3 (81-134)||(19737126-19737178)
chr3 (105-142)||(33755465-33755502)
chr3 (81-142)||(36304100-36304160)
chr3 (181-250)||(46140450-46140519)
chr3 (81-141)||(44571562-44571621)
chr3 (105-141)||(50960760-50960796)
[»] scaffold0050 (1 HSPs)
scaffold0050 (105-142)||(58349-58386)
[»] scaffold0015 (1 HSPs)
scaffold0015 (111-143)||(66658-66690)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 74 - 250
Target Start/End: Complemental strand, 40938113 - 40937933
Alignment:
Q  74 ccatattatccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactc 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40938113 ccatattatccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttgactatccttggtatcatctactc 40938014  T
Q  174 tctctccttactacataatctacgg----gtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    ||||||||||||||||||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40938013 tctctccttactacataatctacaggtctgtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 40937933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 40938236 - 40938177
Alignment:
Q  13 aatatgaataattgaatatccaaaacagaagcaatcataaccctaaattttaaaacttac 72  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  40938236 aatatgaataattgaatatccaaaatagaagcaaccataaccctaaattttaaaacttac 40938177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 42199379 - 42199304
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    |||||||||||||| |||||||  |||||||||||||||||| |||| |  |||||||| |||||||| |||||||    
T  42199379 ctctccttactacagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttc 42199304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 31636109 - 31636184
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    ||||||||||||||  ||| |||||||||||||||||||||| |||| |  |||||||| |||| ||| |||||||    
T  31636109 ctctccttactacaacatccacgggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttc 31636184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 39322153 - 39322207
Alignment:
Q  80 tatccaactcattaatctctagatctttctcttatattttttctaggtcttcctct 135  Q
    |||||||||||||||||| ||||||||||| | ||| |||||||||||||||||||    
T  39322153 tatccaactcattaatctttagatctttct-taatagtttttctaggtcttcctct 39322207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 28005730 - 28005660
Alignment:
Q  80 tatccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttga 151  Q
    |||| ||||||||||||||||||||||||| | ||| |||||||||||||| | | |||| ||| |||||||    
T  28005730 tatcaaactcattaatctctagatctttct-taatagtttttctaggtctttcccggcctataatgatttga 28005660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 14749466 - 14749432
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcct 139  Q
    ||||||||||| |||||||||||||||||||||||    
T  14749466 tttctcttatagtttttctaggtcttcctctgcct 14749432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 5305798 - 5305761
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  5305798 tttctcatatagtttttctaggtcttcctctgcctcta 5305761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 6859540 - 6859503
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  6859540 tttctcttatagtttttctaggtcttcctcttcctcta 6859503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 14667864 - 14667823
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcc 216  Q
    |||||||||||||||||| |||  ||||||||||||||||||    
T  14667864 ctctccttactacataatgtacatgtcttctctctacatgcc 14667823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 15489615 - 15489652
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  15489615 tttctcttattgtttttctaggtcttcctctgcctcta 15489652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 18698952 - 18698907
Alignment:
Q  106 ttctcttatattttttctaggtcttcctctgcctctaacgatttga 151  Q
    |||||||||| ||||||||||| ||||||||||||||  |||||||    
T  18698952 ttctcttatagtttttctaggtattcctctgcctctagtgatttga 18698907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 2066193 - 2066165
Alignment:
Q  79 ttatccaactcattaatctctagatcttt 107  Q
    |||||||||||||||||||||||||||||    
T  2066193 ttatccaactcattaatctctagatcttt 2066165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 7678672 - 7678644
Alignment:
Q  81 atccaactcattaatctctagatctttct 109  Q
    |||||||||||||||||||||||||||||    
T  7678672 atccaactcattaatctctagatctttct 7678644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 14667965 - 14667937
Alignment:
Q  81 atccaactcattaatctctagatctttct 109  Q
    |||||||||||||||||||||||||||||    
T  14667965 atccaactcattaatctctagatctttct 14667937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 28676685 - 28676613
Alignment:
Q  178 tccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    ||||||| ||||||| ||  ||||||||||||||||||| |||| |  |||| ||| |||||||| |||||||    
T  28676685 tccttacgacataatttaaaggtcttctctctacatgccgaaaccacctaagactattttccaccatcttttc 28676613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 221
Target Start/End: Complemental strand, 5338907 - 5338771
Alignment:
Q  81 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctcc 180  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||  ||| ||||||||||   | | |||||    ||||||    
T  5338907 atccaactcattaatctctagatctttctcttatagtttttctaggtctacttctgcctctagtgatctgaatatcctccatctgatcta----ctctcc 5338812  T
Q  181 ttactacataatctacgggtcttctctctacatgcctaaac 221  Q
    |||||| |  |||||| |||||||||||| |||||| ||||    
T  5338811 ttactaaagcatctacaggtcttctctctgcatgcccaaac 5338771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 13827667 - 13827730
Alignment:
Q  80 tatccaactcattaatctctagatctttctctta-tattttttctaggtcttcctctgcctcta 142  Q
    |||||||||||||||||||||||  ||| ||||| || ||||||||||||||||||||||||||    
T  13827667 tatccaactcattaatctctagacttttttcttaatagtttttctaggtcttcctctgcctcta 13827730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 109079 - 109129
Alignment:
Q  79 ttatccaactcattaatctctagatctttctcttatattttttctaggtct 129  Q
    ||||||||||||||||| |||| |||||||||||||| |||||||||||||    
T  109079 ttatccaactcattaatgtctatatctttctcttatagtttttctaggtct 109129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 43375687 - 43375817
Alignment:
Q  82 tccaactcattaatctctagatctttctcttata-ttttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctcc 180  Q
    ||||||||||||||||||| |||||||| | ||| || ||||||||||| ||||||||||||  ||||| | |||||    | | |||||||||||        
T  43375687 tccaactcattaatctctaaatctttct-taatagttatttctaggtctccctctgcctctagtgattttactatccaccatctgatctactctct---- 43375781  T
Q  181 ttactacataatctacgggtcttctctctacatgcc 216  Q
    |||||||||||||||  |||||||||||||||||||    
T  43375782 ttactacataatctataggtcttctctctacatgcc 43375817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 40416464 - 40416389
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||| |  |||| ||  |||||||| |||||||    
T  40416464 ctctccttactacaaaatctacagttcttctctctacatgcctaaaccacctaagcctcgtttccaccatcttttc 40416389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 17233858 - 17233919
Alignment:
Q  80 tatccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||| ||||| || ||||||||| | ||| ||||||||||||||||||||||||||    
T  17233858 tatccaactcaataatcgctggatctttct-taatagtttttctaggtcttcctctgcctcta 17233919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 17640242 - 17640288
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaac 221  Q
    |||||||||||||| |||| |||||||| ||||||||||||||||||    
T  17640242 ctctccttactacaaaatccacgggtctcctctctacatgcctaaac 17640288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 38869041 - 38868995
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgatttga 151  Q
    ||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  38869041 tttctcttatagtttttctaggtcttcttctgcctctaatgatttga 38868995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 44008738 - 44008692
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgatttga 151  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||    
T  44008738 tttctcttagattttttctaggtcttcctctgcctctagtgatttga 44008692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 19908228 - 19908269
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcc 216  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  19908228 ctctccttactacataatctacaggttttctctctacatgcc 19908269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 6025762 - 6025718
Alignment:
Q  107 tctcttatattttttctaggtcttcctctgcctctaacgatttga 151  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||    
T  6025762 tctcttatagtttttctaggtcttcctctgcctctagtgatttga 6025718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 17640153 - 17640200
Alignment:
Q  79 ttatccaactcattaatctctagatctttctcttatattttttctaggt 127  Q
    |||||||||||||||||||||||||| ||| |||||| |||||||||||    
T  17640153 ttatccaactcattaatctctagatccttc-cttatagtttttctaggt 17640200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 37591190 - 37591127
Alignment:
Q  80 tatccaactcattaatctctagatctttctctta-tattttttctaggtcttcctctgcctctaa 143  Q
    |||||||||||||||||||||||| ||| ||||| || |||||| ||||||||||||||| ||||    
T  37591190 tatccaactcattaatctctagattttt-tcttaatagtttttccaggtcttcctctgccactaa 37591127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 43423812 - 43423737
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    |||| |||||||||||||||||  |||||||||||||||| | |||| |  |||| ||| |||||||| |||||||    
T  43423812 ctctacttactacataatctacaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttc 43423737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 48431595 - 48431670
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    ||||| |||||||| |||||||  |||||||||||||||||| |||| |  |||| ||| |||||||| |||||||    
T  48431595 ctctctttactacaaaatctacaagtcttctctctacatgcccaaaccacctaagcctattttccaccatcttttc 48431670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 30834100 - 30834146
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgatttga 151  Q
    |||||||||||  |||||||||||||||||| |||||| ||||||||    
T  30834100 tttctcttatagcttttctaggtcttcctctccctctatcgatttga 30834146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 35828738 - 35828776
Alignment:
Q  174 tctctccttactacataatctacgggtcttctctctaca 212  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  35828738 tctctccttactacataatctataggtcttctctctaca 35828776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 42501267 - 42501221
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgatttga 151  Q
    ||||||||||| ||||||||||| ||||||| ||||||| |||||||    
T  42501267 tttctcttatagtttttctaggttttcctctacctctaatgatttga 42501221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 52442651 - 52442697
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgatttga 151  Q
    |||||||||||||| |||||||||||||||| ||||||  |||||||    
T  52442651 tttctcttatatttgttctaggtcttcctctacctctagagatttga 52442697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 10569258 - 10569302
Alignment:
Q  177 ctccttactacataatctacgggtcttctctctacatgcctaaac 221  Q
    |||| ||||||| ||||||| ||||||||||||||||||| ||||    
T  10569258 ctccgtactacagaatctacaggtcttctctctacatgcccaaac 10569302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 30834064 - 30834092
Alignment:
Q  80 tatccaactcattaatctctagatctttc 108  Q
    |||||||||||||||||||||||||||||    
T  30834064 tatccaactcattaatctctagatctttc 30834092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 250
Target Start/End: Original strand, 38135336 - 38135476
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttc 204  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||| ||| ||||||      |||||  ||| ||||||||||||| ||||||| |||||||    
T  38135336 tttctcttatactttttctaggtcttcatctgcctctaatgatctgactatcct-----ccatctgatctatctccttactacaaaatctactggtcttc 38135430  T
Q  205 tctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    | |||||||| | |||| |  |||| ||| |||||||| |||||||    
T  38135431 tgtctacatgtccaaaccacctaagcctattttccaccatcttttc 38135476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 48202827 - 48202931
Alignment:
Q  107 tctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttctc 206  Q
    ||||||||| |||||||||| |||||||||||| ||| ||||||| |||||    ||| |||||    |||||||||||||| |||||||  ||||||||    
T  48202827 tctcttatagtttttctaggccttcctctgcctataatgatttgactatccaccatatgatcta----ctctccttactacagaatctacaagtcttctc 48202922  T
Q  207 tctacatgc 215  Q
    |||||||||    
T  48202923 tctacatgc 48202931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 28542032 - 28542109
Alignment:
Q  81 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatcctt 159  Q
    |||||||||||||||||||| |||||||| | ||| ||||||||||||||||| ||||||||  ||| ||| |||||||    
T  28542032 atccaactcattaatctctaaatctttct-taatagtttttctaggtcttcctatgcctctagtgatctgattatcctt 28542109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 12966115 - 12966040
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    |||||||||||||| ||| ||||||||||||||||||||||| |||| |  ||||  || |||||||| |||||||    
T  12966115 ctctccttactacagaatttacgggtcttctctctacatgcccaaaccacctaagcatagtttccaccatcttttc 12966040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 28628056 - 28628168
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttc 204  Q
    ||||||||||| ||||||||||||||||||| |||||   ||||||| ||||||   |   |||||||||    |||||||||||||||||| ||| |||    
T  28628056 tttctcttatagtttttctaggtcttcctctacctcttgtgatttgactatcctccatcggatctactct----ccttactacataatctacaggttttc 28628151  T
Q  205 tctctacatgcctaaac 221  Q
    ||| |||||||| ||||    
T  28628152 tctttacatgcccaaac 28628168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 42187563 - 42187488
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    |||||||||||||||||||||| || ||||||| |||||||| |||| |  |||| ||| |||||||| |||||||    
T  42187563 ctctccttactacataatctacaggccttctctttacatgcccaaaccacctaagcctattttccaccatcttttc 42187488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 36101865 - 36101925
Alignment:
Q  81 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||||||||| || |||||||  | ||| ||||||||||||||||||||||||||    
T  36101865 atccaactcattaatctataaatctttca-taataatttttctaggtcttcctctgcctcta 36101925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 30144970 - 30144941
Alignment:
Q  80 tatccaactcattaatctctagatctttct 109  Q
    ||||||||||||||||||||||||||||||    
T  30144970 tatccaactcattaatctctagatctttct 30144941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 30814794 - 30814831
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  30814794 tttctcttatagtgtttctaggtcttcctctgcctcta 30814831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 45601635 - 45601598
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  45601635 tttctcttatagtttttctaggtcttcctctacctcta 45601598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 47848833 - 47848796
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  47848833 tttctcttatagtttttctagttcttcctctgcctcta 47848796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 1569210 - 1569182
Alignment:
Q  81 atccaactcattaatctctagatctttct 109  Q
    |||||||||||||||||||||||||||||    
T  1569210 atccaactcattaatctctagatctttct 1569182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 24549776 - 24549804
Alignment:
Q  81 atccaactcattaatctctagatctttct 109  Q
    |||||||||||||||||||||||||||||    
T  24549776 atccaactcattaatctctagatctttct 24549804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 27893652 - 27893727
Alignment:
Q  82 tccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatcct 158  Q
    |||| |||||||||||||| |||||||| | ||| |||||||||| ||||||||  |||||  ||| ||||||||||    
T  27893652 tccagctcattaatctctaaatctttct-taatagtttttctaggacttcctctatctctagtgatctgaatatcct 27893727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 28562489 - 28562525
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctct 141  Q
    |||||||||||||||||||||||| |||||| |||||    
T  28562489 tttctcttatattttttctaggtcatcctctacctct 28562525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 30664762 - 30664734
Alignment:
Q  81 atccaactcattaatctctagatctttct 109  Q
    |||||||||||||||||||||||||||||    
T  30664762 atccaactcattaatctctagatctttct 30664734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 45601670 - 45601642
Alignment:
Q  81 atccaactcattaatctctagatctttct 109  Q
    |||||||||||||||||||||||||||||    
T  45601670 atccaactcattaatctctagatctttct 45601642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 31339718 - 31339657
Alignment:
Q  81 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctcta 142  Q
    |||||||||||||||||||||||  ||||| |||| ||||||||||||||||||||||||||    
T  31339718 atccaactcattaatctctagataattctcatatagtttttctaggtcttcctctgcctcta 31339657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 54470300 - 54470225
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    |||||||||||||||||| |||  |||||||||||||||||| |||| |  |||||||| |||||||| |||||||    
T  54470300 ctctccttactacataatttacatgtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttc 54470225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 33191053 - 33191100
Alignment:
Q  191 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttc 238  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||||    
T  33191053 atctacgggtcttctctctacatgcccaaacaatctaagtctattttc 33191100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 28497582 - 28497536
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaac 221  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||||    
T  28497582 ctctccttactacataatctacaagtcttctctctacatgcccaaac 28497536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 49987567 - 49987530
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  49987567 tttctcttatagtttttctaggtcttcctctgcctcta 49987530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 31459188 - 31459137
Alignment:
Q  81 atccaactcattaatctctagatctttctcttatattttttctaggtcttcct 133  Q
    |||||||||||||||||||| ||||||| || ||| |||||||||||||||||    
T  31459188 atccaactcattaatctctaaatctttc-ctaatagtttttctaggtcttcct 31459137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 44047455 - 44047487
Alignment:
Q  77 tattatccaactcattaatctctagatctttct 109  Q
    |||||||||||||||||||||||||||||||||    
T  44047455 tattatccaactcattaatctctagatctttct 44047487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 44719487 - 44719531
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgattt 149  Q
    ||||| |||||||||||||||||||||||| |||||||| |||||    
T  44719487 tttcttttatattttttctaggtcttcctcagcctctaatgattt 44719531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 8286508 - 8286461
Alignment:
Q  191 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttc 238  Q
    ||||||||||||||||||||||||||||||| || |||| ||| ||||    
T  8286508 atctacgggtcttctctctacatgcctaaaccatctaagcctattttc 8286461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 20605290 - 20605215
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    |||||||||| ||| ||||||| | ||||||||||||||||| |||| ||  || |||| |||||||| |||||||    
T  20605290 ctctccttaccacagaatctacagctcttctctctacatgcccaaaccataaaattctagtttccaccatcttttc 20605215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 33227286 - 33227239
Alignment:
Q  191 atctacgggtcttctctctacatgcctaaacaatgtaagtctaatttc 238  Q
    |||||||||||||||||||||||||| ||||||| |||| ||| ||||    
T  33227286 atctacgggtcttctctctacatgcccaaacaatctaagcctattttc 33227239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 47372744 - 47372677
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccacc 242  Q
    |||| ||| ||||| |||| |||||||||| |||||||||||||||| ||  ||||||| ||||||||    
T  47372744 ctcttcttcctacaaaatccacgggtcttcgctctacatgcctaaaccatcgaagtctagtttccacc 47372677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 7682033 - 7682070
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  7682033 tttctcttatagtttttccaggtcttcctctgcctcta 7682070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 13805388 - 13805425
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  13805388 tttctcttatagtttttctaggttttcctctgcctcta 13805425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 109
Target Start/End: Original strand, 22420804 - 22420833
Alignment:
Q  80 tatccaactcattaatctctagatctttct 109  Q
    ||||||||||||||||||||||||||||||    
T  22420804 tatccaactcattaatctctagatctttct 22420833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 29398965 - 29398924
Alignment:
Q  117 tttttctaggtcttcctctgcctctaacgatttgaatatcct 158  Q
    ||||||||||||||||||||||||||  ||||||| ||||||    
T  29398965 tttttctaggtcttcctctgcctctagtgatttgactatcct 29398924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 31339626 - 31339589
Alignment:
Q  178 tccttactacataatctacgggtcttctctctacatgc 215  Q
    |||||||||||||||||||  |||||||||||||||||    
T  31339626 tccttactacataatctacaagtcttctctctacatgc 31339589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 41192256 - 41192227
Alignment:
Q  80 tatccaactcattaatctctagatctttct 109  Q
    ||||||||||||||||||||||||||||||    
T  41192256 tatccaactcattaatctctagatctttct 41192227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 45569132 - 45569169
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  45569132 tttctcttataatgtttctaggtcttcctctgcctcta 45569169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 47147568 - 47147539
Alignment:
Q  80 tatccaactcattaatctctagatctttct 109  Q
    ||||||||||||||||||||||||||||||    
T  47147568 tatccaactcattaatctctagatctttct 47147539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 53540445 - 53540412
Alignment:
Q  109 tcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||| ||||||||||||||||||||||||||    
T  53540445 tcttatagtttttctaggtcttcctctgcctcta 53540412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 25575018 - 25574990
Alignment:
Q  81 atccaactcattaatctctagatctttct 109  Q
    |||||||||||||||||||||||||||||    
T  25575018 atccaactcattaatctctagatctttct 25574990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 26024938 - 26024966
Alignment:
Q  81 atccaactcattaatctctagatctttct 109  Q
    |||||||||||||||||||||||||||||    
T  26024938 atccaactcattaatctctagatctttct 26024966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 26025007 - 26025035
Alignment:
Q  81 atccaactcattaatctctagatctttct 109  Q
    |||||||||||||||||||||||||||||    
T  26025007 atccaactcattaatctctagatctttct 26025035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 35690430 - 35690394
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctct 141  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  35690430 tttctcttatagtttttctaggtcttcctctacctct 35690394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 47611880 - 47611848
Alignment:
Q  111 ttatattttttctaggtcttcctctgcctctaa 143  Q
    ||||| |||||||||||||||||||||||||||    
T  47611880 ttataatttttctaggtcttcctctgcctctaa 47611848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 50680934 - 50680906
Alignment:
Q  81 atccaactcattaatctctagatctttct 109  Q
    |||||||||||||||||||||||||||||    
T  50680934 atccaactcattaatctctagatctttct 50680906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 23714450 - 23714525
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||||| |  |||||||| |||||||| |||||||    
T  23714450 ctctccttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttc 23714525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 24102122 - 24102197
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||||| |  |||||||| |||||||| |||||||    
T  24102122 ctctccttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttc 24102197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 13240854 - 13240911
Alignment:
Q  84 caactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctcta 142  Q
    |||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||    
T  13240854 caactcgttaatctctagatctttct-taatagtttttctaggtcttcctctgcctcta 13240911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 13240934 - 13241009
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    |||||||||||| | |||||||  |||||||||||||||||| |||| |  |||| ||| |||||||| |||||||    
T  13240934 ctctccttactaaagaatctacatgtcttctctctacatgcccaaaccacctaagcctagtttccaccatcttttc 13241009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 9556563 - 9556625
Alignment:
Q  180 cttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccacc 242  Q
    ||||||||| |||||||  ||||||||||||||||||||||| |  |||| ||| ||||||||    
T  9556563 cttactacagaatctacttgtcttctctctacatgcctaaaccacctaagcctattttccacc 9556625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 18959070 - 18958963
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttc 204  Q
    |||||||| || ||||||||||||||||||||||||| | ||| ||| ||||||   | | |||||    |||||||||||||| || || | |||||||    
T  18959070 tttctcttgtagtttttctaggtcttcctctgcctctgatgatctgactatcctccatctgatcta----ctctccttactacaaaagctgcaggtcttc 18958975  T
Q  205 tctctacatgcc 216  Q
    ||||| ||||||    
T  18958974 tctctgcatgcc 18958963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 26784463 - 26784509
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgatttga 151  Q
    ||||||||||| |||||||||||||| |||||||||||  |||||||    
T  26784463 tttctcttatagtttttctaggtctttctctgcctctagtgatttga 26784509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 11412901 - 11412842
Alignment:
Q  81 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctcta 142  Q
    |||||||||||||||||||| ||||||| || ||| ||||||||||| |||||||| |||||    
T  11412901 atccaactcattaatctcta-atctttc-ctaatagtttttctaggttttcctctggctcta 11412842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 45437000 - 45436964
Alignment:
Q  106 ttctcttatattttttctaggtcttcctctgcctcta 142  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  45437000 ttctcttataatttttataggtcttcctctgcctcta 45436964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 38178383 - 38178479
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttc 204  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||||| ||||||   | | |||||    |||||||||||||| ||||||| |||||||    
T  38178383 tttctcttatagtttttctaggtcttcctctacctctagcgatttgactatcctccatctgatcta----ctctccttactacaaaatctacaggtcttc 38178478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 45512618 - 45512669
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatc 156  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||| ||||    
T  45512618 tttctcttatagtttttctaggtcttcctctgcctctagtgatttgactatc 45512669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 35643729 - 35643766
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  35643729 tttctcttatagtttttctaggtcttcctctgcctcta 35643766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 4011242 - 4011198
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgattt 149  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||||    
T  4011242 tttctcttatagtttttctaggtcttcctctgtctctagcgattt 4011198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 29520808 - 29520697
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttc 204  Q
    ||||||||||| |||||||||| |||||||| |||||   ||||||| ||||||   | | ||||||||||    ||||||||| |||||||  ||||||    
T  29520808 tttctcttatagtttttctagg-cttcctctacctcttgtgatttgactatcctccatctgatctactctc----cttactacaaaatctacaagtcttc 29520714  T
Q  205 tctctacatgcctaaac 221  Q
    |||||||||||| ||||    
T  29520713 tctctacatgcccaaac 29520697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 41971879 - 41971952
Alignment:
Q  82 tccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatc 156  Q
    ||||||||||||||||||| |||||||| |  || ||||||||||| ||||| ||||||||  ||||||| ||||    
T  41971879 tccaactcattaatctctaaatctttct-tagtagtttttctaggttttcctttgcctctagtgatttgactatc 41971952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 109
Target Start/End: Original strand, 1549478 - 1549507
Alignment:
Q  80 tatccaactcattaatctctagatctttct 109  Q
    ||||||||||||||||||||||||||||||    
T  1549478 tatccaactcattaatctctagatctttct 1549507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 2216447 - 2216410
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  2216447 tttctcttatgttttttctaggtcttcctctacctcta 2216410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 109
Target Start/End: Original strand, 10079994 - 10080023
Alignment:
Q  80 tatccaactcattaatctctagatctttct 109  Q
    ||||||||||||||||||||||||||||||    
T  10079994 tatccaactcattaatctctagatctttct 10080023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 109
Target Start/End: Original strand, 38483056 - 38483085
Alignment:
Q  80 tatccaactcattaatctctagatctttct 109  Q
    ||||||||||||||||||||||||||||||    
T  38483056 tatccaactcattaatctctagatctttct 38483085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 79134 - 79090
Alignment:
Q  177 ctccttactacataatctacgggtcttctctctacatgcctaaac 221  Q
    |||||||||||| ||||||| |||||||||| |||||||| ||||    
T  79134 ctccttactacaaaatctacaggtcttctctatacatgcccaaac 79090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 9695804 - 9695649
Alignment:
Q  90 attaatctctagatctttctcttatattttttctaggtcttcctctgcctctaacgatttgaata-tccttggtatcatctactctctctccttactaca 188  Q
    ||||||||||||||||||||   ||| |||||| | || ||||||||||||||  ||||||| || |||||  | |||||||||||||    ||||| ||    
T  9695804 attaatctctagatctttct-aaatagtttttccaagttttcctctgcctctagtgatttgactactcctt-atctcatctactctct----ttacttca 9695711  T
Q  189 taatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
     ||||||| || |||||||||||||||| |||| |  |||| | | |||||||| |||||||    
T  9695710 gaatctacaggacttctctctacatgcccaaaccacctaagccgagtttccaccatcttttc 9695649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 30783130 - 30783158
Alignment:
Q  81 atccaactcattaatctctagatctttct 109  Q
    |||||||||||||||||||||||||||||    
T  30783130 atccaactcattaatctctagatctttct 30783158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 39388978 - 39388950
Alignment:
Q  80 tatccaactcattaatctctagatctttc 108  Q
    |||||||||||||||||||||||||||||    
T  39388978 tatccaactcattaatctctagatctttc 39388950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 41444463 - 41444502
Alignment:
Q  105 tttctcttata--ttttttctaggtcttcctctgcctcta 142  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  41444463 tttctcttatagtttttttctaggtcttcctctgcctcta 41444502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 45419394 - 45419358
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctct 141  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  45419394 tttctcttatagtttttctaggtcttcctctacctct 45419358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 2079433 - 2079358
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    ||||||||||||||||||||||   |||||||||||||| ||||||| |  |||| ||| |||||||| |||||||    
T  2079433 ctctccttactacataatctacaaatcttctctctacatacctaaaccacttaagcctattttccaccatcttttc 2079358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 34628 - 34665
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  34628 tttctcttatagtttttctaggtcttcctctgcctcta 34665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 21870254 - 21870299
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaa 220  Q
    |||||||||||||| ||||||| ||||||||||||| |||||||||    
T  21870254 ctctccttactacaaaatctacaggtcttctctctaaatgcctaaa 21870299  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 3963984 - 3963922
Alignment:
Q  80 tatccaactcattaatctctagatctttctc-ttatattttttctaggtcttcctctgcctct 141  Q
    |||| ||||||||||||| ||||| ||| || ||||| ||||||||||||||||||| |||||    
T  3963984 tatcaaactcattaatctatagatttttttccttatagtttttctaggtcttcctctacctct 3963922  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 6293575 - 6293621
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaac 221  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| ||||    
T  6293575 ctctccttattacataatctacaggtgttctctctacatgcccaaac 6293621  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 1747764 - 1747801
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  1747764 tttctcttatggtttttctaggtcttcctctgcctcta 1747801  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 9593831 - 9593867
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctct 141  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  9593831 tttctcttataatttttctaggtcttcctctacctct 9593867  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 21200641 - 21200566
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    ||||||||||| || |||||||  |||||||||||||||||| |||| |  |||||||| |||||||| |||||||    
T  21200641 ctctccttactgcagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttc 21200566  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 36820152 - 36820223
Alignment:
Q  177 ctccttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttt 248  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||| |  |||| ||| |||||||| |||||    
T  36820152 ctccttactacataatctatgggtcttctctttacatgtctaaaccacctaagcctagtttccaccatcttt 36820223  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 31261065 - 31261111
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgatttga 151  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||    
T  31261065 tttctcttatagtttttctaggtcttcctctgcctctagtgatttga 31261111  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 54365098 - 54365134
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctct 141  Q
    ||||||||||| |||||||||||||||||||||||||    
T  54365098 tttctcttatagtttttctaggtcttcctctgcctct 54365134  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 39600804 - 39600916
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctctaacgatttgaatatccttggtatcatctactctctctccttactacataatctacgggtcttc 204  Q
    ||||||||||| ||||||||||||||||||| |||||  | || ||| |||||| | | | |||||    |||||||  ||||| ||||||| |||||||    
T  39600804 tttctcttatagtttttctaggtcttcctctacctcttgcaatctgactatcctcgatctgatcta----ctctcctcgctacagaatctacaggtcttc 39600899  T
Q  205 tctctacatgcctaaac 221  Q
    ||| |||||||| ||||    
T  39600900 tctttacatgccaaaac 39600916  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 19758081 - 19758028
Alignment:
Q  81 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctct 135  Q
    |||||||||||||||||||| || |||| || ||| |||||||||||||||||||    
T  19758081 atccaactcattaatctctaaatatttc-ctaatagtttttctaggtcttcctct 19758028  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 29475880 - 29475810
Alignment:
Q  81 atccaactcattaatctctagatctttc---------tcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||||||||||||||||||||         |||||||  |||||||||||||||||||||||||    
T  29475880 atccaactcattaatctctagatctttcttaatagtttcttatagcttttctaggtcttcctctgcctcta 29475810  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 30572988 - 30573026
Alignment:
Q  176 tctccttactacataatctacgggtcttctctctacatg 214  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  30572988 tctccttactacataatctataggtcttctctctacatg 30573026  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 109
Target Start/End: Original strand, 41452826 - 41452856
Alignment:
Q  79 ttatccaactcattaatctctagatctttct 109  Q
    |||||||||||||||||||||||||||||||    
T  41452826 ttatccaactcattaatctctagatctttct 41452856  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 2968304 - 2968263
Alignment:
Q  175 ctctccttactacataatctacgggtcttctctctacatgcc 216  Q
    |||||||||||||| |||||| || |||||||||||||||||    
T  2968304 ctctccttactacaaaatctatggatcttctctctacatgcc 2968263  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 19737178 - 19737126
Alignment:
Q  81 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctc 134  Q
    |||||||||||||||||||| || |||| || ||| ||||||||||||||||||    
T  19737178 atccaactcattaatctctaaatatttc-ctaatagtttttctaggtcttcctc 19737126  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 33755465 - 33755502
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  33755465 tttctcttatagtttttctaggttttcctctgcctcta 33755502  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 36304160 - 36304100
Alignment:
Q  81 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||||||||||||||||||||| | ||| |||| |||||||| |  |||||||||    
T  36304160 atccaactcattaatctctagatctttct-taatagttttactaggtctacaactgcctcta 36304100  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 46140519 - 46140450
Alignment:
Q  181 ttactacataatctacgggtcttctctctacatgcctaaacaatgtaagtctaatttccaccgtcttttc 250  Q
    |||||||| ||||||| ||||||||||||| ||| | |||| |  | |||||| ||||||||||||||||    
T  46140519 ttactacagaatctacaggtcttctctctatatgtccaaaccacctgagtctagtttccaccgtcttttc 46140450  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 44571621 - 44571562
Alignment:
Q  81 atccaactcattaatctctagatctttctcttatattttttctaggtcttcctctgcctct 141  Q
    |||||||||||||||||||| || |||| |||||| ||||||||| ||||| ||| |||||    
T  44571621 atccaactcattaatctctaaatatttc-cttatagtttttctagatcttcttctacctct 44571562  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 50960760 - 50960796
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctct 141  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  50960760 tttctcttaaattttttctaggtcttcctctccctct 50960796  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 58349 - 58386
Alignment:
Q  105 tttctcttatattttttctaggtcttcctctgcctcta 142  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  58349 tttctcttatcgtttttctaggtcttcctctgcctcta 58386  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 66690 - 66658
Alignment:
Q  111 ttatattttttctaggtcttcctctgcctctaa 143  Q
    ||||| |||||||||||||||||||||||||||    
T  66690 ttataatttttctaggtcttcctctgcctctaa 66658  T

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