View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1941_high_2 (Length: 423)
Name: NF1941_high_2
Description: NF1941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1941_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Original strand, 1573442 - 1573839
Alignment:
| Q |
17 |
atatactatgcttcaaagactttctatgatcaagtgnnnnnnngaaggattttgtggggatggattaatgagactgatgctgaaagtgatgacttggaaa |
116 |
Q |
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| T |
1573442 |
atatactatgcttcaaagactttctatgatcaagtgaaaaaaagaaggattttgtggggatggattaatgagactgatgctgaaagtgatgacttggaaa |
1573541 |
T |
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| Q |
117 |
aaggttgggcatctcttcaggtatgtattatacataacatgctgaaattacatcaatttgccaaagctgaaatgcattgcaaaatgttggatagagcaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1573542 |
aaggttgggcatctcttcaggtatgtattatacataacatactgaaattacatcaatttgccaaagctgaaatgcattgcaaaatgtttgatagagcaat |
1573641 |
T |
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| Q |
217 |
tcataaaatcttgtacac-annnnnnncttcagacaattccaagaacagtgctttttgatcagaagactggaactaatttgcttcaatggccagtagaag |
315 |
Q |
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|||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1573642 |
tcataaaaccttgtacacaatttttttcttcagacaattccaagaacagtgctttttgatcagaagactggaactaatttgcttcaatggccagtagaag |
1573741 |
T |
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| Q |
316 |
aagtagaaagcttaagactgagtagtgatgaatatgcagaagtagttgttacacctggctctattgttccattgaacattactcaagcaacacaggtt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1573742 |
aagtagaaagcttaagactgagtagtgatgaatatgcagaagtagttgttacacctggctctgttgttccattgaacattactcaagcaacacaggtt |
1573839 |
T |
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