View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1941_high_5 (Length: 262)
Name: NF1941_high_5
Description: NF1941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1941_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 31912536 - 31912599
Alignment:
| Q |
8 |
cgagtgagatgaattaagataaaggttaaatattataattccaatttgaagaagagaaaaaacta |
72 |
Q |
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| T |
31912536 |
cgagtgaagtgaattaagataaaggttaaatattat-attccaatttgaagaagagaaaaaacta |
31912599 |
T |
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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 31912597 - 31912643
Alignment:
| Q |
109 |
ctatataattgaattcttatctacttttcagaaatcaaaatcattag |
155 |
Q |
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| T |
31912597 |
ctatataattgaattcttatctacttttcagaaatcaaaatcattag |
31912643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 31912655 - 31912696
Alignment:
| Q |
204 |
ttggacttcaagtgttctgaaattttctgagatggtgaaagt |
245 |
Q |
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| T |
31912655 |
ttggacttcaagtgttctgaaattttctgagatggtgaaagt |
31912696 |
T |
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