View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1941_high_6 (Length: 250)

Name: NF1941_high_6
Description: NF1941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1941_high_6
NF1941_high_6
[»] chr3 (2 HSPs)
chr3 (108-230)||(32534826-32534948)
chr3 (12-94)||(32535519-32535606)
[»] chr6 (1 HSPs)
chr6 (12-47)||(33699453-33699488)
[»] chr5 (5 HSPs)
chr5 (12-44)||(37442641-37442673)
chr5 (13-51)||(32303603-32303641)
chr5 (13-47)||(34398144-34398178)
chr5 (14-47)||(7599609-7599642)
chr5 (14-47)||(28218045-28218078)
[»] chr8 (1 HSPs)
chr8 (12-47)||(12750294-12750329)
[»] chr4 (3 HSPs)
chr4 (12-46)||(30863265-30863299)
chr4 (12-48)||(24393687-24393723)
chr4 (12-48)||(36139072-36139108)
[»] chr1 (1 HSPs)
chr1 (14-47)||(27541287-27541320)
[»] chr7 (3 HSPs)
chr7 (12-52)||(3756514-3756554)
chr7 (12-48)||(16862827-16862863)
chr7 (13-49)||(41340872-41340908)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 32534948 - 32534826
Alignment:
Q  108 actaactgttcttttgttaaaggaaggagttgagttaatcttgtttgatcataagaccaaatacataatgcttaaaaacacacacaacaatcactttttt 207  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32534948 actaattgttcttttgttaaaggaaggagttgagttaatcttgtttgatcataagaccaaatacataatgcttaaaaacacacacgacaatcactttttt 32534849  T
Q  208 ctaataataaaaataattaattc 230  Q
    |||||||||||||||||||||||    
T  32534848 ctaataataaaaataattaattc 32534826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 32535606 - 32535519
Alignment:
Q  12 gaatgagcaaaaacagatggaagaagagcaattctccaaaagtttagcagagaa-----aatgttagtaattacttgttcttttgtta 94  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||     |||||||||||||||||||||||||||||    
T  32535606 gaatgagcaaaaacagatggaagaagagcaattttccaaaaatttagccgagaacaatcaatgttagtaattacttgttcttttgtta 32535519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 33699453 - 33699488
Alignment:
Q  12 gaatgagcaaaaacagatggaagaagagcaattctc 47  Q
    ||||||||||||||||||||||||||||||||||||    
T  33699453 gaatgagcaaaaacagatggaagaagagcaattctc 33699488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 37442641 - 37442673
Alignment:
Q  12 gaatgagcaaaaacagatggaagaagagcaatt 44  Q
    |||||||||||||||||||||||||||||||||    
T  37442641 gaatgagcaaaaacagatggaagaagagcaatt 37442673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 32303641 - 32303603
Alignment:
Q  13 aatgagcaaaaacagatggaagaagagcaattctccaaa 51  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  32303641 aatgagcaaaatcagatggaagaagagcaattatccaaa 32303603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 34398144 - 34398178
Alignment:
Q  13 aatgagcaaaaacagatggaagaagagcaattctc 47  Q
    ||||| |||||||||||||||||||||||||||||    
T  34398144 aatgaccaaaaacagatggaagaagagcaattctc 34398178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 7599642 - 7599609
Alignment:
Q  14 atgagcaaaaacagatggaagaagagcaattctc 47  Q
    ||||||||||| ||||||||||||||||||||||    
T  7599642 atgagcaaaaatagatggaagaagagcaattctc 7599609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 28218045 - 28218078
Alignment:
Q  14 atgagcaaaaacagatggaagaagagcaattctc 47  Q
    ||||||||||||| ||||||||||||||||||||    
T  28218045 atgagcaaaaacatatggaagaagagcaattctc 28218078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 12750294 - 12750329
Alignment:
Q  12 gaatgagcaaaaacagatggaagaagagcaattctc 47  Q
    |||||||||||||||||||| |||||||||||||||    
T  12750294 gaatgagcaaaaacagatgggagaagagcaattctc 12750329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 30863299 - 30863265
Alignment:
Q  12 gaatgagcaaaaacagatggaagaagagcaattct 46  Q
    ||||||||||||||| |||||||||||||||||||    
T  30863299 gaatgagcaaaaacaaatggaagaagagcaattct 30863265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 24393687 - 24393723
Alignment:
Q  12 gaatgagcaaaaacagatggaagaagagcaattctcc 48  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  24393687 gaatgagcaaaaacatatgggagaagagcaattctcc 24393723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 36139072 - 36139108
Alignment:
Q  12 gaatgagcaaaaacagatggaagaagagcaattctcc 48  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  36139072 gaatgagcaaaaacatatgggagaagagcaattctcc 36139108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 27541287 - 27541320
Alignment:
Q  14 atgagcaaaaacagatggaagaagagcaattctc 47  Q
    ||||||||||||||||||||||||| ||||||||    
T  27541287 atgagcaaaaacagatggaagaagaacaattctc 27541320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 3756514 - 3756554
Alignment:
Q  12 gaatgagcaaaaacagatggaagaagagcaattctccaaaa 52  Q
    |||||||||||||||| ||| ||||||||||||||| ||||    
T  3756514 gaatgagcaaaaacaggtgggagaagagcaattctctaaaa 3756554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 16862827 - 16862863
Alignment:
Q  12 gaatgagcaaaaacagatggaagaagagcaattctcc 48  Q
    |||||||||||||||||||| |||| |||||||||||    
T  16862827 gaatgagcaaaaacagatgggagaaaagcaattctcc 16862863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 41340908 - 41340872
Alignment:
Q  13 aatgagcaaaaacagatggaagaagagcaattctcca 49  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  41340908 aatgaacaaaaacagatgggagaagagcaattctcca 41340872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University