View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1941_low_4 (Length: 377)
Name: NF1941_low_4
Description: NF1941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1941_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 50211481 - 50211225
Alignment:
| Q |
1 |
ggagaaagaaaagatgaaagaagcggctcaggtttaattgattcgggtcaggtcattagggctatactcaaataaattttttggaccaactagctaacct |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
50211481 |
ggagaaagaaaagatgaaagaagcagctcaggtttaattgattcgggtcaggtcattagggttatactcaaataaattttttggaccaactagctaacct |
50211382 |
T |
|
| Q |
101 |
ataaggcccactacacattcaaagttgtttgctctttgtaagacaacgttcagttttagttcacatgtgagtaattaatttagtcgtgctttcatga-nn |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50211381 |
ataaggcccactacacattcaaagttgtttgctctttgtaagacaacgttcagttttagttcacatgtgagtaattaatttagtcgtgctttcatgattt |
50211282 |
T |
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| Q |
200 |
nnnnnnnggaacattaattaacttattttgtttgttcattagcttgtaaacatttgg |
256 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50211281 |
tttttttggaacaataattaacttattttgtttgttcattagcttgtaaacatttgg |
50211225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 334 - 377
Target Start/End: Complemental strand, 50211146 - 50211103
Alignment:
| Q |
334 |
gttgtatgtattaattcacatgattattcgtaaaaaatattata |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50211146 |
gttgtatgtattaattcacatgattattcgtaaaaaatattata |
50211103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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