View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1941_low_5 (Length: 339)
Name: NF1941_low_5
Description: NF1941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1941_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 9 - 280
Target Start/End: Original strand, 32649258 - 32649527
Alignment:
| Q |
9 |
gagatgaatcactggtgaaaatttaaattttattttgacttgtnnnnnnnnnn------ctaattatattttccatataataccactaaacaagtaaaag |
102 |
Q |
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| T |
32649258 |
gagatgaatcaccggtgaaaatttaaattttattttgacttgtaaaaaaaaaaaaagaactaattatattttccatataataccactaaacaagtaaaag |
32649357 |
T |
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| Q |
103 |
agggatttctcctataatttctattaatggagtactcaataacttcatgctcatcaaatttttggtttgcttttttactcccctaatggtaaata-cccc |
201 |
Q |
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| T |
32649358 |
agggatttctcctgaaatttctattaatggagtactcaataacttcaggctcatcaaatttctggtttgcttttttactcccctaatggtaaataccccc |
32649457 |
T |
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| Q |
202 |
aatacgtcacacgattaatttgaatattttgaatatttttcattatctttgttttattagtaagtatgtcgtttattgc |
280 |
Q |
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| T |
32649458 |
aatacgtgacacgat---------tattttgaatatttttcattatctttgttttattagtaagtatgtcgtttattgc |
32649527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 323
Target Start/End: Original strand, 32649561 - 32649604
Alignment:
| Q |
280 |
cccccactcattagttttctttatttgtccaacgacaaaattgt |
323 |
Q |
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| T |
32649561 |
cccccactcattagttttctttctttgtccaacgacaaaattgt |
32649604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 37135868 - 37135835
Alignment:
| Q |
108 |
tttctcctataatttctattaatggagtactcaa |
141 |
Q |
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| T |
37135868 |
tttctcctacaatttctattaatggagtactcaa |
37135835 |
T |
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