View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1941_low_6 (Length: 291)
Name: NF1941_low_6
Description: NF1941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1941_low_6 |
 | |
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| [»] scaffold0006 (4 HSPs) |
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| [»] chr1 (12 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 129475 - 129200
Alignment:
| Q |
17 |
atctcagtaacatataacttcactaatttgccttaagtgaatttggataatgatataaactagatgcatattgatcataagagtgcaaccaaggttcaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
129475 |
atctcagtaacatataacttcactaatttgtcttaagtgaatttggataatgatataaactagatgcatattgatcataagagtgcaaccaaggttcaat |
129376 |
T |
|
| Q |
117 |
tcaatcaaatgacacattaacatataaaacaatgaagaacaaaacccggactcacaatcgttactaataacctcatattgattcaagattaaaactcaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
129375 |
tcaatcaaatgacacattaacatataaaacaatgaagaacaaaacccggactcacaatcgttactaataaactaatattgattcaagattaaaactcaac |
129276 |
T |
|
| Q |
217 |
-nnnnnnnnnnntatacaccctacgaatttgaactaagcaaagatgttaaatttacatttgaacataaaaataatc |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
129275 |
aaaaaaaaaaaaaatacaccctacgaatttgaactaagcaaagatgttaaatttacatttgaacataaaaataatc |
129200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 215774 - 215500
Alignment:
| Q |
17 |
atctcagtaacatataa---cttcactaatttgccttaagtgaatttggataatgatataaactagatgcatattgatcataagagtgcaaccaaggttc |
113 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
215774 |
atctcagtaacatataataacttcacaaatttgccttaagtgaatttggataatgatataaactagatgcatattgatcataagagtgcaaccaaggttc |
215675 |
T |
|
| Q |
114 |
aattcaatcaaatgacacattaacatataaaacaatgaagaacaaaacccggactcacaatcgttactaataacctcatattgattcaagattaaaactc |
213 |
Q |
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|
||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||| || |||||||||| |
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|
| T |
215674 |
aattcaatcaaatgacacattaatagataaaacaaagaagaacaaaacccggactcacattcgttactaataaattaatattgatttaaaattaaaactc |
215575 |
T |
|
| Q |
214 |
aacnnnnnnnnnnntatacaccctacgaatttgaactaagcaaagatgttaaatttacatttgaacataaaaataatc |
291 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
215574 |
aacaaaataaaa---atacaccctacgaatttgaactaagcaaagatgttaaatttacatttgaacataaaaataatc |
215500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 290
Target Start/End: Complemental strand, 80633 - 80424
Alignment:
| Q |
69 |
atataaactagatgcatattgatcataagagtgcaaccaaggttcaattcaatcaaatgacacattaacatataaaacaatgaagaacaaaacccggact |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||| | |||||||||||||||| |
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|
| T |
80633 |
atataaactagatgcatattgatcataagagtgaaaccaaggttcaattcagtcaaatgacaaattaacaaataaaacaa--aggaacaaaacccggact |
80536 |
T |
|
| Q |
169 |
cacaatcgttactaataacctcatattgattcaagattaaaactcaacnnnnnnnnnnntatacaccctacgaatttgaactaagcaaagatgttaaatt |
268 |
Q |
| |
|
|||| || ||||||| || || ||||||| ||| ||||||||||||| |||||||||| |||||||||| |||||||||||||||| |
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| T |
80535 |
cacagtcattactaacaaactaatattgaatcatgattaaaactcaa----------aaaatacaccctatgaatttgaacaaagcaaagatgttaaaag |
80446 |
T |
|
| Q |
269 |
tacatttgaacataaaaataat |
290 |
Q |
| |
|
|| ||| |||| |||||||||| |
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|
| T |
80445 |
tagattcgaacttaaaaataat |
80424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 193393 - 193477
Alignment:
| Q |
63 |
ataatgatataaactagatgcatattgatcataagagtgcaaccaaggttcaattcaatcaaatgacacattaacatataaaacaa |
148 |
Q |
| |
|
||||| || |||| |||||||||||||||| ||||| || || ||||||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
193393 |
ataataatctaaaatagatgcatattgatcgtaagaatggaaacaaggttcaattcaatc-aatgacacattaacagataaaacaa |
193477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 13600818 - 13600543
Alignment:
| Q |
17 |
atctcagtaacatataacttcactaatttgccttaagtgaatttggataatgatataaactagatgcatattgatcataagagtgcaaccaaggttcaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13600818 |
atctcagtaacatataacttcactaatttgtcttaagtgaatttggataatgatataaactagatgcatattgatcataagagtgcaaccaaggttcaat |
13600719 |
T |
|
| Q |
117 |
tcaatcaaatgacacattaacatataaaacaatgaagaacaaaacccggactcacaatcgttactaataacctcatattgattcaagattaaaactcaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
13600718 |
tcaatcaaatgacacattaacatataaaacaatgaagaacaaaacccggactcacaatcgttactaataaactaatattgattcaagattaaaactcaac |
13600619 |
T |
|
| Q |
217 |
-nnnnnnnnnnntatacaccctacgaatttgaactaagcaaagatgttaaatttacatttgaacataaaaataatc |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13600618 |
aaaaaaaaaaaaaatacaccctacgaatttgaactaagcaaagatgttaaatttacatttgaacataaaaataatc |
13600543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 66 - 214
Target Start/End: Complemental strand, 13484216 - 13484067
Alignment:
| Q |
66 |
atgatataaactagatgcatattgatcataagagtgcaaccaaggttcaattcaatcaaatgacacattaacatataaaac-aatgaagaacaaaacccg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || ||||| |||||||| |
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|
| T |
13484216 |
atgatataaactagatgcatattgatcataagagtgcaaccaaggttcaattcagtcaaatgacacattaacagataaaacaaaataagaataaaacccg |
13484117 |
T |
|
| Q |
165 |
gactcacaatcgttactaataacctcatattgattcaagattaaaactca |
214 |
Q |
| |
|
||||||||||| ||||||| || || || |||| |||||||||||||||| |
|
|
| T |
13484116 |
gactcacaatcattactaacaaactaatcttgaatcaagattaaaactca |
13484067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 16756744 - 16756862
Alignment:
| Q |
66 |
atgatataaactagatgcatattgatcataagagtgcaaccaaggttcaattcaatcaaatgacacattaacatataaaac-aatgaagaacaaaacccg |
164 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| |||| || || ||||||||||||||| |
|
|
| T |
16756744 |
atgatataaactaaatgcatattgatcataagagtgcaaccatggttcaagtcagtcaaatgacacattaacaaataagacaaaagaagaacaaaacccg |
16756843 |
T |
|
| Q |
165 |
gactcacaatcgttactaa |
183 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
16756844 |
gactcacaatcattactaa |
16756862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 13627590 - 13627718
Alignment:
| Q |
19 |
ctcagtaacatataacttcactaatttgccttaagtgaatttggataatgatataaactagatgcatattgatcataagagtgcaaccaaggttcaattc |
118 |
Q |
| |
|
|||| ||||| |||| ||||||||||||| | ||||||||| ||||| || |||| |||||||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
13627590 |
ctcattaacaaataatttcactaatttgcatcaagtgaattaaaataataatctaaagtagatgcatattgatcgtaagaatgcaaacaaggttcaattc |
13627689 |
T |
|
| Q |
119 |
aatcaaatgacacattaacatataaaacaa |
148 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |
|
|
| T |
13627690 |
aatc-aatgacacattaacagataaaacaa |
13627718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 20575797 - 20575687
Alignment:
| Q |
35 |
ttcactaatttgccttaagtgaatttggataatgatataaactagatgcatattgatcataagagtgcaaccaaggttcaattcaatcaaatgacacatt |
134 |
Q |
| |
|
||||||||||||| | ||||||||| ||||| || | || |||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
20575797 |
ttcactaatttgcatcaagtgaattaaaataataatctcaaatagatgcatattgatcgtaagattgcaaacaaggttcaattcaatc-aatgacacatt |
20575699 |
T |
|
| Q |
135 |
aacatataaaac |
146 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
20575698 |
aacagataaaac |
20575687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 19154880 - 19154941
Alignment:
| Q |
229 |
atacaccctacgaatttgaactaagcaaagatgttaaatttacatttgaacataaaaataat |
290 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19154880 |
atacacccaacgaaattgaacaaagcaaagatgttaaatttacattcgaacataaaaataat |
19154941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 16756895 - 16756947
Alignment:
| Q |
238 |
acgaatttgaactaagcaaagatgttaaatttacatttgaacataaaaataat |
290 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16756895 |
acgaatttgaacaaagcaaagatgttaaatttacattcgaacataaaaataat |
16756947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 13562773 - 13562857
Alignment:
| Q |
63 |
ataatgatataaactagatgcatattgatcataagagtgcaaccaaggttcaattcaatcaaatgacacattaacatataaaacaa |
148 |
Q |
| |
|
||||| || |||| |||||||| ||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
13562773 |
ataataatctaaaatagatgcacattgatcgtaagaatgcaaacaaggttcaattcaatc-gatgacacattaacagataaaacaa |
13562857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 19154776 - 19154853
Alignment:
| Q |
106 |
caaggttcaattcaatcaaatgacacattaacatataaaac-aatgaagaacaaaacccggactcacaatcgttactaa |
183 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||| || ||||||||||||| | ||||||||| ||||||| |
|
|
| T |
19154776 |
caaggttcaattcaatcaa-tgacacattaacaaataaaacaaaagaagaacaaaacctaggctcacaatcattactaa |
19154853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 13446740 - 13446793
Alignment:
| Q |
94 |
taagagtgcaaccaaggttcaattcaatcaaatgacacattaacatataaaacaa |
148 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
13446740 |
taagaatgcaaacaaggttcaattcaatc-aatgacacattaacagataaaacaa |
13446793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 13484060 - 13484015
Alignment:
| Q |
229 |
atacaccctacgaatttgaactaagcaaagatgttaaatttacatt |
274 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
13484060 |
atacatcctacgaaattgaacaaagcaaagatgttaaatttacatt |
13484015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 13530325 - 13530453
Alignment:
| Q |
19 |
ctcagtaacatataacttcactaatttgccttaagtgaatttggataatgatataaactagatgcatattgatcataagagtgcaaccaaggttcaattc |
118 |
Q |
| |
|
|||| ||||| |||| ||||||||||||| | ||| |||| |||| || |||| |||||||| ||||||| ||||| || || | |||||||||| |
|
|
| T |
13530325 |
ctcattaacaaataatttcactaatttgcatcaagagaataaaaataagaatctaaaatagatgcacattgatcgtaagaatgaaaacgaggttcaattt |
13530424 |
T |
|
| Q |
119 |
aatcaaatgacacattaacatataaaacaa |
148 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| |
|
|
| T |
13530425 |
aatcaa-tgacacattaacagataaaacaa |
13530453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 21768952 - 21769080
Alignment:
| Q |
19 |
ctcagtaacatataacttcactaatttgccttaagtgaatttggataatgatataaactagatgcatattgatcataagagtgcaaccaaggttcaattc |
118 |
Q |
| |
|
|||| ||||| |||| ||||||||||||| | |||||||| ||||| || |||| |||||||||||||||| | ||| ||||| |||||||||||| |
|
|
| T |
21768952 |
ctcattaacaaataatttcactaatttgcatcaagtgaataaaaataataatctaaaatagatgcatattgatcgttagaatgcaaacaaggttcaattt |
21769051 |
T |
|
| Q |
119 |
aatcaaatgacacattaacatataaaacaa |
148 |
Q |
| |
|
||| |||||||||||||||| ||||||||| |
|
|
| T |
21769052 |
aat-aaatgacacattaacagataaaacaa |
21769080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 21820894 - 21820964
Alignment:
| Q |
63 |
ataatgatataaactagatgcatattgatcataagagtgcaaccaaggttcaattcaatcaaatgacacatt |
134 |
Q |
| |
|
||||| ||| |||||||||| |||||||| ||||| |||| ||||||||||||||||| ||||||||||| |
|
|
| T |
21820894 |
ataataatacaaactagatggatattgatagtaagaacgcaaacaaggttcaattcaatc-aatgacacatt |
21820964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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