View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1941_low_9 (Length: 242)
Name: NF1941_low_9
Description: NF1941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1941_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 33681345 - 33681132
Alignment:
| Q |
20 |
gtaataaccaatgcaccagaaggtggaactgaaagcaacaacctactcaatttctttgcaaatgaggcagcaaggtaagctgggagaaggggtgacttta |
119 |
Q |
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| T |
33681345 |
gtaataaccaatgcaccagaaggtggaactgagagcaacagcctactcaatttctttgcaaatgaggcagcaaggtaagctgggagaaggggtgacttta |
33681246 |
T |
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| Q |
120 |
agcaaaaatcaagaagctgcaaaaagcaaa-------ttgccagaaaatgaaggacttgcatatgtgaatatttttcgtaac--ttttactctaatactc |
210 |
Q |
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| T |
33681245 |
ggcaaaaatcaagaagctgcaaaaagcaaattgcatattgccagaaaatgaaggacttgcatatgtgaatatttttcgtaacttttttactctaatactc |
33681146 |
T |
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| Q |
211 |
tgtcatttgaatat |
224 |
Q |
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|||||||||||||| |
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| T |
33681145 |
tgtcatttgaatat |
33681132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 33666743 - 33666532
Alignment:
| Q |
20 |
gtaataaccaatgcaccagaaggtggaactgaaagcaacaacctactcaatttctttgcaaatgaggcagcaaggtaagctgggagaaggggtgacttta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
33666743 |
gtaataaccaatgcaccagaaggtggaactgaaagcaacagcctactcaatttctttgcaaatgaggcagccaggtaagctggaagaaggggtgacttta |
33666644 |
T |
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| Q |
120 |
agcaaaaatcaagaagctgcaaaaagcaaattgc-------cagaaaatgaaggacttgcatatgtgaatatttttcgtaacttttactctaatactctg |
212 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || || |||| | |||||| |
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| T |
33666643 |
ggcaagaatcaagaagctgcaaaaagcaaattgcatattgtcagaaaatgaaagacttgcatatgtgaatatttttcgtgacattcactccagtactctt |
33666544 |
T |
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| Q |
213 |
tcatttgaatat |
224 |
Q |
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|||||||||||| |
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| T |
33666543 |
tcatttgaatat |
33666532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 33666407 - 33666362
Alignment:
| Q |
179 |
gaatatttttcgtaacttttactctaatactctgtcatttgaatat |
224 |
Q |
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|||||||||||||||| || |||||| |||||| |||||||||||| |
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| T |
33666407 |
gaatatttttcgtaacattcactctagtactctatcatttgaatat |
33666362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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