View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19420_high_1_N (Length: 418)
Name: NF19420_high_1_N
Description: NF19420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19420_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 28 - 395
Target Start/End: Complemental strand, 54289946 - 54289577
Alignment:
| Q |
28 |
acactgcagtatattgaatagtacctgtcctgtcactgtatacagtctgttataccagccatttgttaacatcccaatagctgaatatagatgtttgcga |
127 |
Q |
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| T |
54289946 |
acactgcagtatattgaatagtacctgtcctgtcactgtatacagtctgttataccagccatttgttaacatcccaatagctgaatatagatgtttgcga |
54289847 |
T |
|
| Q |
128 |
ccctcaccaggactttgcagcgtatactcaatgaaataaaatcctgagccgttttttcgaggcaaactagcagttagaacttcaaaattcaacccataat |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54289846 |
ccctcaccaggactttgcagcgtatactcaatgaaataaaatcctgagccgttttttcgaggcaaactagcagttagaacttcaaaattcaacccataat |
54289747 |
T |
|
| Q |
228 |
ttcagttttgagaagtctttcactgtctcaataata--atacattagaactatatgtaacctataacatattttctttcccttacagttgcaaccttata |
325 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54289746 |
ttcagttttgagaagtctttcactgtctcattaataatatacattagaactatatgtaacctataacatattttctttcccttacagttgcaaccttata |
54289647 |
T |
|
| Q |
326 |
acatgtactgtaatgtaatgcagcagctttcaatgacatttaacagtaaaagtatgcacctttagatgat |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54289646 |
acatgtactgtaatgtaatgcagcagctttcaatgacatttaacagtaaaagtatgcacctttagatgat |
54289577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 38 - 395
Target Start/End: Original strand, 11684338 - 11684695
Alignment:
| Q |
38 |
atattgaatagtacctgtcctgtcactgtatacagtctgttataccagccatttgttaacatcccaatagctgaatatagatgtttgcgaccctcaccag |
137 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11684338 |
atatcgaatagtacctgtcctgtcgctgtatacagtctgttataccaaccatctgttaacatcccaatagctgaatatagatgtttgcgaccctcaccag |
11684437 |
T |
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| Q |
138 |
gactttgcagcgtatactcaatgaaataaaatcctgagccgttttttcgaggcaaactagcagttagaacttcaaaattcaacccataatttcagttttg |
237 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| || | ||||||| ||||||||||| ||||||||||||||||| |
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| T |
11684438 |
gactttgcagcgtatactcaataaaataaaatcctgaaccgttttttggaggcaaattaataattagaacgtcaaaattcaatccataatttcagttttg |
11684537 |
T |
|
| Q |
238 |
agaagtctttcactgtctcaataataatacattagaactatatgtaacctataacatattttctttcccttacagttgcaaccttataacatgtactgta |
337 |
Q |
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|||||||| || |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
11684538 |
agaagtctctctctgtctcattaagcatacattagaactatatataacctataacatattttctttcccttatagttgcaaccttataacatgtactgca |
11684637 |
T |
|
| Q |
338 |
atgtaatgcagcagctttcaatgacatttaacagtaaaagtatgcacctttagatgat |
395 |
Q |
| |
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| |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
11684638 |
aaataatgcagcaactttcaatgacatttaagagtaaaagcatgcacctttagatgat |
11684695 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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