View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19420_high_2 (Length: 353)
Name: NF19420_high_2
Description: NF19420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19420_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 43255609 - 43255951
Alignment:
| Q |
1 |
agcatatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255609 |
agcatatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtcc |
43255708 |
T |
|
| Q |
101 |
aactcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255709 |
aactcctgtaacaagagcttgaataaagtaacccaatattgccaacattgctaaccttccattcttaacttccttcagctttaattctttcaatgatttc |
43255808 |
T |
|
| Q |
201 |
tcatctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgtt |
300 |
Q |
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| T |
43255809 |
tcatctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgtt |
43255908 |
T |
|
| Q |
301 |
ttcccatggaaccaggattgtaccaatcttggagtcttctgtg |
343 |
Q |
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| T |
43255909 |
ttcccatggaaccaggattgtaccaatcttggagtcttctgtg |
43255951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 43258875 - 43259217
Alignment:
| Q |
1 |
agcatatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43258875 |
agcatatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtcc |
43258974 |
T |
|
| Q |
101 |
aactcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43258975 |
aactcctgtaacaagagcttgaataaagtaacccaatattgccaacattgctaaccttccattcttaacttccttcagctttaattccttcaatgatttc |
43259074 |
T |
|
| Q |
201 |
tcatctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgtt |
300 |
Q |
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| T |
43259075 |
tcatctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgtt |
43259174 |
T |
|
| Q |
301 |
ttcccatggaaccaggattgtaccaatcttggagtcttctgtg |
343 |
Q |
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| T |
43259175 |
ttcccatggagccaggattgtaccaatcttggaatcttctgtg |
43259217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 307
Target Start/End: Original strand, 43247615 - 43247918
Alignment:
| Q |
4 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaac |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
43247615 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtttgaagggtcagccaaatgatttaagaagttttggtatggtccaac |
43247714 |
T |
|
| Q |
104 |
tcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctca |
203 |
Q |
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|| |||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
43247715 |
tcttgtaactagagcttgaacaaagtaacccaatattgccaacatagctaaccttccattcttaacttccttcagctttaaatccttcaatgatttctca |
43247814 |
T |
|
| Q |
204 |
tctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| |
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| T |
43247815 |
tctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcaccggaaccgccaagacctttctcaagtcctaaaaagtattgttttc |
43247914 |
T |
|
| Q |
304 |
ccat |
307 |
Q |
| |
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|||| |
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| T |
43247915 |
ccat |
43247918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 43233964 - 43234059
Alignment:
| Q |
45 |
aagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatatt |
140 |
Q |
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| T |
43233964 |
aagatgttgttgttgaaagggtcagccaaatgatccaagaggttttggtatggtccaactcctgtaacaagagattgaacaaagtcacccagtatt |
43234059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 43254090 - 43254144
Alignment:
| Q |
4 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
58 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43254090 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
43254144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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