View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19420_high_5 (Length: 341)
Name: NF19420_high_5
Description: NF19420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19420_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 7415329 - 7415659
Alignment:
| Q |
1 |
aacaactcaaaatcatgtccttttacatctatatctttaccaagaaacctctcaggcataaattcatatggattctcccaaacctcagaatctcttgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7415329 |
aacaactcaaaatcatgtccttttacatctatatctttaccaagaaacctctcaggcataaattcatatggattctcccaaacctcagaatctcttgcaa |
7415428 |
T |
|
| Q |
101 |
ttgtccaagtattgacaagaactatagtccctttgggaatatcgtaaccatcaactttgcaatcctctctagcttctcgtggcactaaaaatggtgccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7415429 |
ttgtccaagtattgacaagaactatagtccctttgggaatatcgtaaccatcaactttgcaatcctctctagcttctcgtggcactaaaaatggtgccac |
7415528 |
T |
|
| Q |
201 |
gggatgtagcctcattgtttctttagcaattgcataaacataaggtaaattcgcaatgtctttctcttcaacccatctatcttttcctatcactctatct |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7415529 |
gggatgtagcctcattgtttctttagcaattgcgtaaacataaggtaaattcgcaatgtctttctcttcaacccatctatcttttcctatcactctatct |
7415628 |
T |
|
| Q |
301 |
agctcctcggttgctttcttgaagatctctg |
331 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
7415629 |
agctcctcggttgctttcttgaagatctctg |
7415659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 7422988 - 7423318
Alignment:
| Q |
1 |
aacaactcaaaatcatgtccttttacatctatatctttaccaagaaacctctcaggcataaattcatatggattctcccaaacctcagaatctcttgcaa |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||| |||||||||||| ||||| ||||||||||| |||||||| | || ||||||| ||| |
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| T |
7422988 |
aacaactcataatcatgtccttttacatctatattattaccaataaacctctcaggtataaactcatatggattgtcccaaacattaggatctcttccaa |
7423087 |
T |
|
| Q |
101 |
ttgtccaagtattgacaagaactatagtccctttgggaatatcgtaaccatcaactttgcaatcctctctagcttctcgtggcactaaaaatggtgccac |
200 |
Q |
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||||||||||||||||||||| || ||||||||| || ||||| ||||||||||| ||||||||||| |||||||||| ||||||||| |||||||| | |
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| T |
7423088 |
ttgtccaagtattgacaagaattagagtcccttttgggatatcataaccatcaacattgcaatcctcactagcttctcttggcactaacaatggtgctgc |
7423187 |
T |
|
| Q |
201 |
gggatgtagcctcattgtttctttagcaattgcataaacataaggtaaattcgcaatgtctttctcttcaacccatctatcttttcctatcactctatct |
300 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| | ||| |
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| T |
7423188 |
aggatgaagcctcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaacccatctatctcttcctattactttgtct |
7423287 |
T |
|
| Q |
301 |
agctcctcggttgctttcttgaagatctctg |
331 |
Q |
| |
|
|| ||||| || ||| |||||| ||||||| |
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|
| T |
7423288 |
agttcctccgtagctctcttgataatctctg |
7423318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 45 - 331
Target Start/End: Original strand, 7429441 - 7429727
Alignment:
| Q |
45 |
aaacctctcaggcataaattcatatggattctcccaaacctcagaatctcttgcaattgtccaagtattgacaagaactatagtccctttgggaatatcg |
144 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| || ||||| |
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| T |
7429441 |
aaacctctctggtataaattcatatggattatcccaactatcagaatctcttccaattgtccaagtattgacaagaatcatagtcccttttggtatatca |
7429540 |
T |
|
| Q |
145 |
taaccatcaactttgcaatcctctctagcttctcgtggcactaaaaatggtgccacgggatgtagcctcattgtttctttagcaattgcataaacataag |
244 |
Q |
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||||||||||| ||||||| ||| ||||||||| ||||||||| | ||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
7429541 |
taaccatcaacattgcaattctcagtagcttctcttggcactaacattggtgtcacaggatgaagcctcattgtttctttagcaattgcaaaaacataag |
7429640 |
T |
|
| Q |
245 |
gtaaattcgcaatgtctttctcttcaacccatctatcttttcctatcactctatctagctcctcggttgctttcttgaagatctctg |
331 |
Q |
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||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||| || ||| |||||| ||||||| |
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| T |
7429641 |
gtaaattgacaatgtctttctcttcaacccatctatctctccctattactctatctagttcctctgtagctctcttgataatctctg |
7429727 |
T |
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