View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19420_high_6 (Length: 333)
Name: NF19420_high_6
Description: NF19420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19420_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 2 - 324
Target Start/End: Complemental strand, 28988348 - 28988029
Alignment:
| Q |
2 |
agccacaaaataacagggctcaaaatcagaacccggaagcatcattaacataatcaatgtacacaacctcagagaaaagaaagaagaaaaggtatttttc |
101 |
Q |
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| T |
28988348 |
agccacaaaataacagggctcaaaatcagaacccagaagcatcattaacataatc---gtacacaacctcagagaaaagaaagaagaaaaggtatttttc |
28988252 |
T |
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| Q |
102 |
ccccaccacactacaattatttaaagctccaaaattctaacttagactttactagctacgaagcagacaccgacacgacactgacacggatacgtcgaca |
201 |
Q |
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| T |
28988251 |
ccccaccacactacaattatttaaagctccaaaattctaacttatactttactagctacgaagcagacaccgacacgacactgacacggatacgtcgaca |
28988152 |
T |
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| Q |
202 |
caggtgatttatgtgtaggtgttgtgtcagtgtcagacaccggtgcgttttggatacaggaaacacctaatctaagaggtgtccgtgcttcagaacttac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28988151 |
caggtgatttatgtgtaggtgttgtgtcagtgtcagacaccggtgcgttttggacacaggaaacacctaatctaagaggtgtccgtgcttcagaacttac |
28988052 |
T |
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| Q |
302 |
tagtaacaactcactacctatga |
324 |
Q |
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||||||||||||||||||||||| |
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| T |
28988051 |
tagtaacaactcactacctatga |
28988029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 202
Target Start/End: Complemental strand, 44572683 - 44572654
Alignment:
| Q |
173 |
gacacgacactgacacggatacgtcgacac |
202 |
Q |
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| T |
44572683 |
gacacgacactgacacggatacgtcgacac |
44572654 |
T |
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