View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19420_low_1 (Length: 292)
Name: NF19420_low_1
Description: NF19420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19420_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 4520100 - 4520345
Alignment:
| Q |
13 |
tttttgctacttttgagtgctaaatttgtgacagaaatcatgaaaattaaccgatgttatacttatctcacacagacatatggatacattctaagtagtt |
112 |
Q |
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| T |
4520100 |
tttttgctacttttgagtgctaaacttgtgacagaaatcatgaaaattaaccgatgttatacttatctcacacagacatatggatacattctaagtagtt |
4520199 |
T |
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| Q |
113 |
taatattcagtgtctgtctcaaacagtagcagacaccacaactattcttgaattttccattataattgttttaaggatcgttgaatgattctaaaacata |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4520200 |
taatattcagtgtctgtctcaaacagtagcagacaccacaactgttcttgaactttccattataattgttttaaggatcgttgaatgattctaaaacata |
4520299 |
T |
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| Q |
213 |
aatgaatttatcacaaacaaagtaaacacttcctataaatttgttt |
258 |
Q |
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| T |
4520300 |
aatgaatttatcacaaacaaagtaaacacttcctataaatttgttt |
4520345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 4520377 - 4520412
Alignment:
| Q |
257 |
ttttcaagacatcaacacagataaaaagatacttac |
292 |
Q |
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| T |
4520377 |
ttttcaagacatcaacacaaataaaaagatacttac |
4520412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 120 - 258
Target Start/End: Original strand, 8152424 - 8152567
Alignment:
| Q |
120 |
cagtgtctgtctcaaacagtagcagacaccacaactattcttgaattttccattataattgttttaaggatcgttgaatgattctaaaacataaatgaat |
219 |
Q |
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| T |
8152424 |
cagtgtctgtctcaaacagtagcagacaccacaactgttcttgaactttccattataactgtttcaatgatcgttcaatgattttaaaacataagtgaac |
8152523 |
T |
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| Q |
220 |
ttatcacaaacaaagta-----aacacttcctataaatttgttt |
258 |
Q |
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| T |
8152524 |
ttatcacaaacaaagtataaagaacacttcgtataaatttgttt |
8152567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 8152599 - 8152634
Alignment:
| Q |
257 |
ttttcaagacatcaacacagataaaaagatacttac |
292 |
Q |
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||||||||||||||||||| |||||||||||||||| |
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| T |
8152599 |
ttttcaagacatcaacacaaataaaaagatacttac |
8152634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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