View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19421_high_14 (Length: 386)

Name: NF19421_high_14
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19421_high_14
NF19421_high_14
[»] chr7 (4 HSPs)
chr7 (177-369)||(17494711-17494903)
chr7 (177-369)||(17558311-17558503)
chr7 (13-153)||(17494921-17495061)
chr7 (13-153)||(17558153-17558293)
[»] chr4 (3 HSPs)
chr4 (179-349)||(1922008-1922178)
chr4 (78-153)||(1922198-1922273)
chr4 (13-47)||(1922275-1922309)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 177 - 369
Target Start/End: Complemental strand, 17494903 - 17494711
Alignment:
Q  177 tctgcgtggataagtaacttatctacttcattgaaggnnnnnnncatttgaaacaaaataaataataaggtgcatgtgatatcgaattttagtagggtta 276  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17494903 tctgcgtggataagtaacttatctacttcattgaaggaaaaaaacatttgaaacaaaataaataataaggtgcatgtgatatcgaattttagtagggtta 17494804  T
Q  277 tagcacgaatcacgtgtaccacgtttaccttcccatgcttccaacatggttgcagatgcatgttgcatgcttaacgtttattttacaataata 369  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17494803 tagcacgaatcacgtgtaccacgcttaccttcccatgcttccaacatggttgcagatgcatgttgcatgcttaatgtttattttacaataata 17494711  T

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Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 177 - 369
Target Start/End: Original strand, 17558311 - 17558503
Alignment:
Q  177 tctgcgtggataagtaacttatctacttcattgaaggnnnnnnncatttgaaacaaaataaataataaggtgcatgtgatatcgaattttagtagggtta 276  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17558311 tctgcgtggataagtaacttatctacttcattgaaggaaaaaaacatttgaaacaaaataaataataaggtgcatgtgatatcgaattttagtagggtta 17558410  T
Q  277 tagcacgaatcacgtgtaccacgtttaccttcccatgcttccaacatggttgcagatgcatgttgcatgcttaacgtttattttacaataata 369  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17558411 tagcacgaatcacgtgtaccacgcttaccttcccatgcttccaacatggttgcagatgcatgttgcatgcttaatgtttattttacaataata 17558503  T

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Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 17495061 - 17494921
Alignment:
Q  13 aatatggacaaattaagccacagaaactcctccacttagtacaaaataaatagatagagagaatattaaaatgtcattaattattttttggtagtatatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17495061 aatatggacaaattaagccacagaaactcctccacttagtacaaaataaatagatagagagaatattaaaatgtcattaattattttttggtagtatatt 17494962  T
Q  113 aaaatgtcattatatctgcatggaaaagataaactccttcc 153  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  17494961 aaaatgtcattatatctgcatggataagataaactccttcc 17494921  T

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Target: chr7; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 17558153 - 17558293
Alignment:
Q  13 aatatggacaaattaagccacagaaactcctccacttagtacaaaataaatagatagagagaatattaaaatgtcattaattattttttggtagtatatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17558153 aatatggacaaattaagccacagaaactcctccacttagtacaaaataaatagatagagagaatattaaaatgtcattaattattttttggtagtatatt 17558252  T
Q  113 aaaatgtcattatatctgcatggaaaagataaactccttcc 153  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  17558253 aaaatgtcattatatctgcatggataagataaactccttcc 17558293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 1922178 - 1922008
Alignment:
Q  179 tgcgtggataagtaacttatctacttcattgaaggnnnnnnncatttgaaacaaaataaataataaggtgcatgtgatatcgaattttagtagggttata 278  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1922178 tgcgtggataagtaacttatctacttcattgaaggaaaaaaacatttgaaacaaaataaataataaggtacatgtgatatcgaattttagtagggttata 1922079  T
Q  279 gcacgaatcacgtgtaccacgtttaccttcccatgcttccaacatggttgcagatgcatgttgcatgctta 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1922078 gcacgaatcacgtgtaccacgtttaccttcccatgcttccaacatggttgcagatgcatgttgcatgctta 1922008  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 1922273 - 1922198
Alignment:
Q  78 ttaaaatgtcattaattattttttggtagtatattaaaatgtcattatatctgcatggaaaagataaactccttcc 153  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1922273 ttaaaatgtcattaatttttttttggtagtatattaaaatgtcattatatctgcatggataagataaactccttcc 1922198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 1922309 - 1922275
Alignment:
Q  13 aatatggacaaattaagccacagaaactcctccac 47  Q
    |||||||||||||||||||||||||| ||||||||    
T  1922309 aatatggacaaattaagccacagaaaatcctccac 1922275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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