View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_high_20 (Length: 362)
Name: NF19421_high_20
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 37147755 - 37147399
Alignment:
| Q |
1 |
atttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaattccataccttttgctacacaaaatca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
37147755 |
atttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatttcatacctttagctacacaaaatca |
37147656 |
T |
|
| Q |
101 |
tattcaaaacaaaaggattatctttaaataaatacctctcagatnnnnnnnttgcagaaagtcagaaacattatgagtagaaaaggaatgaagaaaaaat |
200 |
Q |
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| T |
37147655 |
tattcaaaacaaaaggattatctctaaataaatacctctcagataaaaaaattgcagaaagtcagaaacattatgagtagaaaaggaatgaagaaaaaat |
37147556 |
T |
|
| Q |
201 |
gattatcattagttgtaactagctttgtacatcaagtatttataagctatgctaactaacttgaactaacttaaaccataggattattacatcagtaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37147555 |
gattatcattagttgtaactagctttgtacatcaagtatttataagctatgctaactaacatgaactaacttaaaccataggattattacatcagtaact |
37147456 |
T |
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| Q |
301 |
aactttctagtttacttgctatgcaagtcatcactatcttccttggcctttgcttct |
357 |
Q |
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| T |
37147455 |
aactttctagtttacttgctatgcaagtcatcactatcttccttggcccttgcttct |
37147399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 7894488 - 7894562
Alignment:
| Q |
1 |
atttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatt |
75 |
Q |
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| T |
7894488 |
atttaattaattaattcacaatttcgttttcaatttcatccaacaaacatttattgtaatttatcctcttcaatt |
7894562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 35718141 - 35718220
Alignment:
| Q |
3 |
ttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaattccatacc |
82 |
Q |
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|||||||||||||| ||||| | ||||||||||| ||||||||||||| | ||||||||| |||||||||||| |||||| |
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| T |
35718141 |
ttaattaattaatttacaatgtcgttttcaactttgtccaacaaacattctttgtaatttgtcctcttcaatttcatacc |
35718220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 35411163 - 35411089
Alignment:
| Q |
1 |
atttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatt |
75 |
Q |
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|||||||||||||||||||||||| ||||| || |||||||||||||||| | ||| ||||||||||||| |||| |
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| T |
35411163 |
atttaattaattaattcacaatttcgttttgaatttcgtccaacaaacattcattgaaatttatcctctttaatt |
35411089 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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