View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_high_24 (Length: 323)
Name: NF19421_high_24
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 49433277 - 49433591
Alignment:
| Q |
1 |
taatgtccactcattgttattaaatggtgatgcatctacaatctactttgacgttaatatgagtgtcaaggcatggcagagcattttgaatatgagtcaa |
100 |
Q |
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| T |
49433277 |
taatgtccactcattgttattaaatggtgatgcatctacaatctactttgacgttaatatgagtgtcaaggcatggcagagcattttgaatatgagtcaa |
49433376 |
T |
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| Q |
101 |
atnnnnnnnnnncaataagatgaaaaatataatcagtcaagatgaaagaaacattagtatgactgtcaaggaatggcaaggcaggacattcatgaatagt |
200 |
Q |
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| T |
49433377 |
ataaaaaaaaaacaataagatgaaaaatataatcagtcaagatgaaagaaacattagtatgactgtcaaggaatggcaaggcaagacattcatgaatagt |
49433476 |
T |
|
| Q |
201 |
atatgcagagctcttgacacagtttatcccaaaatatattcaattaattgcttgactgatcatccgagaaattaccatttcaaaattgaacacaattatt |
300 |
Q |
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| T |
49433477 |
atatgcagagctcttgacacagtttatcccaaaatatattcaatcaattgcttgactgatcatccgagaaattaccatttcaaaattgaacacaattatt |
49433576 |
T |
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| Q |
301 |
tgcatccattcatct |
315 |
Q |
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| T |
49433577 |
tgcatccattcatct |
49433591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 58 - 311
Target Start/End: Original strand, 22377595 - 22377848
Alignment:
| Q |
58 |
tatgagtgtcaaggcatggcagagcattttgaatatgagtcaaatnnnnnnnnnncaataagatgaaaaatataatcagtcaagatgaaagaaacattag |
157 |
Q |
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| T |
22377595 |
tatgagtgtcaaggcatggcagagcattttgaatatgaatcaaataaaaaaaaaacaataagatgaaaaatataatcagtcaagatgaaagaaacattag |
22377694 |
T |
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| Q |
158 |
tatgactgtcaaggaatggcaaggcaggacattcatgaatagtatatgcagagctcttgacacagtttatcccaaaatatattcaattaattgcttgact |
257 |
Q |
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| T |
22377695 |
tatgactgtgaaggcatggcaaggtaggacattcatgaatagtatatgcagagctcttgacacagtttatcccaaaatatattcaattaattgcttgact |
22377794 |
T |
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| Q |
258 |
gatcatccgagaaattaccatttcaaaattgaacacaattatttgcatccattc |
311 |
Q |
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| T |
22377795 |
gatcatccaagaaattaccatttcaaaattgaacacagttatttgcatccattc |
22377848 |
T |
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