View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_high_30 (Length: 292)
Name: NF19421_high_30
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 37147734 - 37147998
Alignment:
| Q |
1 |
attgtgaattaattaattaaatcaatgttgaactcttaattaagagaaatcaatagcgattatcaatccattacgaaaaccatagcctgaagctctgtat |
100 |
Q |
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| T |
37147734 |
attgtgaattaattaattaaatcaatgttgaactcttaattaagagaaattaatagcgattatcaatccattacgaaaaccatagcctgaagctctgtat |
37147833 |
T |
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| Q |
101 |
tctctaatgttcgggtctggctattacttttttggttacatgttcaggtctgggtttctacaccatttttgttgctaatgaaatttgatttcaaagtcct |
200 |
Q |
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| T |
37147834 |
tctctaatgttcgggtctggctattatttttatagttacatgttcaggtctgggtttctacaccatttttgttgctaatgaaatttgatttcaaagtcct |
37147933 |
T |
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| Q |
201 |
-tataattttatttacaatttaatttaattgtttctgaagtattttaggatattatgttagattt |
264 |
Q |
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| T |
37147934 |
aaataattttatttacaatttaatttaattgtttctgaagtattttaggatattatgttagattt |
37147998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 7894509 - 7894431
Alignment:
| Q |
1 |
attgtgaattaattaattaaatcaatgttgaactcttaattaagagaaatcaatagcgattatcaatccattacgaaaa |
79 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| || | |||||||| |
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| T |
7894509 |
attgtgaattaattaattaaatcaaagttgaactcttaattaagggaaatcaatagcgattatcagtcgaatacgaaaa |
7894431 |
T |
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