View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_high_35 (Length: 242)
Name: NF19421_high_35
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 51296320 - 51296530
Alignment:
| Q |
12 |
aagaaaatgttaattacttttacatgcataaatcctgtggggtataaatatgcatattgcctaatctatttctaagcccacgttagaagaaaattcaagt |
111 |
Q |
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| T |
51296320 |
aagaatatgttaattacttttacatgcataaatcctgtggggtataaatatgcatattgcctaatctatttctaagcccaaattagaagaaaattcaagt |
51296419 |
T |
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| Q |
112 |
tcaaaagagagtcaagaacttgtatcttgacatggtcaactagaaatcttaataacgggccgggaggggcaatacaaatgaggtgtagtgtgagtgccaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
51296420 |
tcaaaagagagtcaagaacttgtatcttgacatggtcaactagaaatcttaataa-----cgggaggggcaatacaaatgtggtgtagtgtgagtgccaa |
51296514 |
T |
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| Q |
212 |
acattactgttacatg |
227 |
Q |
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|||||||||||||||| |
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| T |
51296515 |
acattactgttacatg |
51296530 |
T |
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