View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_high_37 (Length: 233)
Name: NF19421_high_37
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_high_37 |
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| [»] scaffold0756 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 9869777 - 9869974
Alignment:
| Q |
18 |
aatttttgacccaatgttgatttgctgcctacatttcttttcttgggagctgcagctgcttttgcaggtggcttggcattttgagcagcctttctccctc |
117 |
Q |
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| T |
9869777 |
aatttttgacccaatgttgatttgctgcctacatttcttttcttgggagctgcagctgcttttgcaggtggcttggcattttgaacagcctttctccctc |
9869876 |
T |
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| Q |
118 |
ccttcttagccggggcagccttctcttgaacttcaaacttatcatcctcagcagcagccttcttggcattttgagcagcaggctttctcccacccttc |
215 |
Q |
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| T |
9869877 |
ccttcttagccggggcagccttctcttgaacttcaaactcatcatcctcagcagcagccttcttggcattttgagcagcaggctttctcccacccttc |
9869974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 38835394 - 38835431
Alignment:
| Q |
178 |
tcttggcattttgagcagcaggctttctcccacccttc |
215 |
Q |
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| T |
38835394 |
tcttggcattttgagcagcaggctttctccctcccttc |
38835431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 9869938 - 9870003
Alignment:
| Q |
89 |
cttggcattttgagcagc---ctttctccctcccttcttagccggggcagccttctcttgaacttc |
151 |
Q |
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| T |
9869938 |
cttggcattttgagcagcaggctttctcccacccttcttagctggagcagcgttttcttgaacttc |
9870003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 38835395 - 38835460
Alignment:
| Q |
89 |
cttggcattttgagcagc---ctttctccctcccttcttagccggggcagccttctcttgaacttc |
151 |
Q |
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| T |
38835395 |
cttggcattttgagcagcaggctttctccctcccttcttaactagggcagccttctattgtacttc |
38835460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 38835333 - 38835379
Alignment:
| Q |
18 |
aatttttgacccaatgttgatttgctgcctacatttcttttcttggg |
64 |
Q |
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| T |
38835333 |
aatttttgacccaatgtttgtctggtgcctacatttcttttcttggg |
38835379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0756 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0756
Description:
Target: scaffold0756; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 5499 - 5531
Alignment:
| Q |
117 |
cccttcttagccggggcagccttctcttgaact |
149 |
Q |
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| T |
5499 |
cccttcttagctggggcagccttctcttgaact |
5531 |
T |
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