View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_high_39 (Length: 215)
Name: NF19421_high_39
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 672816 - 673013
Alignment:
| Q |
1 |
cctaaaactggtgtctcatccaaagacattgtcttttccaatgacccttacctcactgctagactttaccttccaaaactaacacaaaccaatgatcaaa |
100 |
Q |
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| T |
672816 |
cctaaaactggtgtctcatccaaagacattgtcttttccaatgacccttacctcactgctagactttaccttccaaaactaacacaaaccaatgatcaaa |
672915 |
T |
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| Q |
101 |
accaaaaactctccatcttggtttatttttatggtggtgcattcagctttgaatcagcatattcatccatccaccatacatattgtaacctcttagct |
198 |
Q |
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| T |
672916 |
accaaaaactctccatcttggtttatttttatggtggtgcattcagctttgaatcagcatattcatccatccaccatgcatattgtaacctcttagct |
673013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 663056 - 663127
Alignment:
| Q |
12 |
tgtctcatccaaagacattgtcttttccaatgacccttacctcactgctagactttaccttccaaaactaac |
83 |
Q |
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| T |
663056 |
tgtctcatcaaaagacattctcttttccaatgaaccttcactctttgctagactttacctaccaaaactaac |
663127 |
T |
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