View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19421_high_4 (Length: 571)
Name: NF19421_high_4
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 9 - 557
Target Start/End: Original strand, 37221539 - 37222087
Alignment:
| Q |
9 |
ggagcagagaggtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgctaaggataccatgattgaggc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37221539 |
ggagcagagaggtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctatttctaaggataccatgattgaggc |
37221638 |
T |
|
| Q |
109 |
tgagttgctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggttggattttatttttctgtcatgct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37221639 |
tgagttgctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggttggattttatttttctgtcatgct |
37221738 |
T |
|
| Q |
209 |
ttggttttctggtagtggaaattttgtgcttgttctgaatttttctgtcatggttctaatatacacacatcaagcccaataatcatttatacaaacacca |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37221739 |
ttggttttctggtagtggaaattttgtgcttgttctgaatttttctgtcattgttctaatatacacacatcaagcccaataatcatttatacaaacacca |
37221838 |
T |
|
| Q |
309 |
tttaagtaacttttgaattttatttctttctaaattttgctctgtttttgttatnnnnnnnttgttctgttttaataatcc-tttagaatgttaaaaaac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37221839 |
tttaagtaacttttgaattttatttctttctaaattttgctctgtttttgttataaaaaaattgttctgttttaataatccgtttagaatgttaaaaaac |
37221938 |
T |
|
| Q |
408 |
gtttgattatggtatagttggttttcatggataagtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatgaaaaa |
507 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37221939 |
gtttga-tatggtatagttggttttcatggataagtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatgaaaaa |
37222037 |
T |
|
| Q |
508 |
tgcattaaatgatgtttgtttatatattgattgaatgatatgtttgtatt |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37222038 |
tgcattaaatgatgtttgtttatatattgattgaatgatatgtttgtatt |
37222087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 37201045 - 37201237
Alignment:
| Q |
16 |
agaggtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgctaaggataccatgattgaggctgagttg |
115 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||| || ||||| | ||||||||||||||||||||||||||| | | |||||||||||||||| |
|
|
| T |
37201045 |
agaggtttctatggattatggattgttcatcacatatccacttagaagtgaggacactttggagtctattgctaagggtgcagagattgaggctgagttg |
37201144 |
T |
|
| Q |
116 |
ctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggttggatttt--atttttctgtcatg |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |
|
|
| T |
37201145 |
ctgcagaggtacaaccctggtgttaatttcagcaaaggaagtggtcttgtttttattccagggaaaggttagttttttaatttttctgtcatg |
37201237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 37227018 - 37227188
Alignment:
| Q |
15 |
gagaggtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgctaaggataccatgattgaggctgagtt |
114 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||||| |||||||| || | ||||||||||| || ||||||||| |||||| | || ||| |||||| |
|
|
| T |
37227018 |
gagaggtttcaaaagattatggtttgttcattacatatcctcttagacctgacgacactttggaatccattgctaagtataccaaggttaagggtgagtt |
37227117 |
T |
|
| Q |
115 |
gctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggtt |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
37227118 |
gctgcagaggtacaaccctggtgtcaatttcagccaaggaaggggtcttgtttatattccagggaaaggtt |
37227188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 37440593 - 37440762
Alignment:
| Q |
19 |
ggtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactt----tggagtctattgctaaggataccatgattgaggctgagtt |
114 |
Q |
| |
|
|||||| |||||||||||||||||| | ||||| |||||||||||| ||||||||| ||||||| ||||| |||||||||| ||| || |||||||| |
|
|
| T |
37440593 |
ggtttccaaggattatggtttgttcgtaacatatcctcttagttctgaggacacttagtttggagtccattgcaaaggataccaagatggatgctgagtt |
37440692 |
T |
|
| Q |
115 |
gctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggt |
184 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37440693 |
gctgcagaggtacaacccaggtgtgaatttcagccaaggaagtggtctggtttttattccagggaaaggt |
37440762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 37386930 - 37386765
Alignment:
| Q |
19 |
ggtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgctaaggataccatgattgaggctgagttgctg |
118 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| ||||| ||| |||| | || || |||||||||| |
|
|
| T |
37386930 |
ggtttccaaggattatggtttgttcataacatatcctcttagttctgaggacactttggagtccattgcgaagcatacaaaagttaagcctgagttgcta |
37386831 |
T |
|
| Q |
119 |
cagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggt |
184 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||| |
|
|
| T |
37386830 |
cagaagtacaaccctggtgtgaatttcagcaaaggaagtgggctggtttttattccagggaaaggt |
37386765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 70 - 250
Target Start/End: Original strand, 37215637 - 37215814
Alignment:
| Q |
70 |
cactttggagtctattgctaaggataccatgattgaggctgagttgctgcagaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgttttt |
169 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||||| | |
|
|
| T |
37215637 |
cactttggagtccattgctaaggatacgatgattgaaattgagttgctgaagaggtacaac------gtgaatttcagccaaggaagtggtcttgtttat |
37215730 |
T |
|
| Q |
170 |
attccagggaaaggttggat--tttatttttctgtcatgctttggttttctggtag-tggaaattttgtgcttgttctgaattt |
250 |
Q |
| |
|
|||| ||||||||||| ||| || ||||||||||| | |||||| ||||| ||| |||||| |||||||||||| ||||||| |
|
|
| T |
37215731 |
attcgagggaaaggttagatcattcatttttctgtccttttttggtcttctgatagttggaaagtttgtgcttgttatgaattt |
37215814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 432 - 541
Target Start/End: Original strand, 37230884 - 37230993
Alignment:
| Q |
432 |
tcatggataagtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatgaaaaatgcattaaatgatgtttgtttata |
531 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| | |
|
|
| T |
37230884 |
tcatggatgagtaatcaataaatgataatattacatctaactttttaattgtttgttcctctatgttattgaaaaatgcattaagtgatgtttttttgtt |
37230983 |
T |
|
| Q |
532 |
tattgattga |
541 |
Q |
| |
|
|||||||||| |
|
|
| T |
37230984 |
tattgattga |
37230993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 434 - 538
Target Start/End: Original strand, 37227394 - 37227498
Alignment:
| Q |
434 |
atggataagtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatgaaaaatgcattaaatgatgtttgtttatata |
533 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| | || |
|
|
| T |
37227394 |
atggatgagtaatcaataaatgataatattacatctaactttttaattgtttgttcctctatgttattgaaaaatgcattaagtgatgtttttttgttta |
37227493 |
T |
|
| Q |
534 |
ttgat |
538 |
Q |
| |
|
||||| |
|
|
| T |
37227494 |
ttgat |
37227498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 441 - 530
Target Start/End: Original strand, 37215949 - 37216038
Alignment:
| Q |
441 |
agtaatcaataaatgatactattatattgaactttttaattgtttgttcctctatgttaatgaaaaatgcattaaatgatgtttgtttat |
530 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| |||||||||||||| | ||||||||||||||||||| ||||||||| |||| |
|
|
| T |
37215949 |
agtaatcaataaatgataatattatatcaaactttttatttgtttgttcctctgttttaatgaaaaatgcattaagtgatgtttgattat |
37216038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 37196074 - 37196238
Alignment:
| Q |
20 |
gtttctaaggattatggtttgttcatcacataccctcttagttctaaggacactttggagtctattgctaaggataccatgattgaggctgagttgctgc |
119 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| |||||||| || |||| ||||||| | ||| |||| | || ||||| ||||||||||||| |
|
|
| T |
37196074 |
gtttccaaggattatggtttgtttattacatatcctcttagacctgaggattctttggaattgatttctaataagactgaaattgatgctgagttgctgc |
37196173 |
T |
|
| Q |
120 |
agaggtacaaccctggtgtcaatttcagccaaggaagtggtcttgtttttattccagggaaaggt |
184 |
Q |
| |
|
| | ||| ||||||||||| ||||| || ||||| |||||| | |||| |||||| ||||||||| |
|
|
| T |
37196174 |
aaaagtataaccctggtgtgaattttagtcaagggagtggtttggtttatattcctgggaaaggt |
37196238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 37207570 - 37207617
Alignment:
| Q |
13 |
cagagaggtttctaaggattatggtttgttcatcacataccctcttag |
60 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
37207570 |
cagagaggtttccaaggattatggtttgttcatcacatatccacttag |
37207617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University