View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_high_7 (Length: 441)
Name: NF19421_high_7
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 24528659 - 24529086
Alignment:
| Q |
1 |
atgatgggtgatcataaatcttcaaaa-gaaaat-aaatactaggaactaatggttggaaaggaaagaattgtggtgatcaatatggtaggagattttaa |
98 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24528659 |
atgatgggtgatcataaatcttcaaaaagaaaatcaaatactagtaactaatggttggaaaggaaagaattgtggtgatcaatatggtaggagatttcaa |
24528758 |
T |
|
| Q |
99 |
caaaaagattttactactgtcaagtgtcattgctcggaagagtttggtcgcatgcaagttaaatgtccaaaattcatggaggatttacgaagcattaagg |
198 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24528759 |
caaaaagatttgactactgtcaagtgtcattgctcggaagagtttggtcgcatgcaagttaaatgtacaaaattcatggaggatttacgaagcattaagg |
24528858 |
T |
|
| Q |
199 |
agaa-acataaaagttgaagtgtattccttcaacaaaactagttagttatgaagatgatgttgtactttatgaagatgaagttgataataaaatgaagaa |
297 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
24528859 |
agaagacataaaagttaaagtgtattccttcaacaaaactagttagttatgaagatgatgctttactttatgaagatgaagttgataataaaatgaagaa |
24528958 |
T |
|
| Q |
298 |
atatggaactttgaatgaatggaggatatgtcatgtcaaagtgggtactcaatcaagtcccacattgagtagtttgaaaaacaaaggtagatatatatca |
397 |
Q |
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| T |
24528959 |
atatgagactttgaatgaatggaggatatgtcatgtcaaagtgggtacttaatcaagtcccacattgagtagtttgaaaaacaaaggtagatatatatca |
24529058 |
T |
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| Q |
398 |
tagataattagatatggtgatgtatatt |
425 |
Q |
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| T |
24529059 |
tagataattagataaggtgatgtatatt |
24529086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 4443238 - 4443402
Alignment:
| Q |
71 |
tggtgatcaatatggtaggagattttaacaaaaagattttactactgtcaagtgtcattgctcggaagagtttggtcgcatgcaagttaaatgtccaaaa |
170 |
Q |
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|||||||| |||||||| | |||| |||||| ||||| | ||| ||||| ||| ||| || |||||||||| || ||||||||||| || | ||||| |
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| T |
4443238 |
tggtgatcgatatggtataaaatttcaacaaagggatttgagtaccgtcaactgttattactgcgaagagtttgatcacatgcaagttatatattcaaaa |
4443337 |
T |
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| Q |
171 |
ttcatggaggatttacgaagcattaaggaga-aacataaaagttgaagtgtattccttcaacaaa |
234 |
Q |
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| T |
4443338 |
ttaatgaagaatttatgaagcataaatgagatgacaaaaaagttgaagtgtgttccttctacaaa |
4443402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 31227328 - 31227412
Alignment:
| Q |
261 |
tactttatgaagatgaagttgataataaaatgaagaaatatggaactttgaatgaatggaggatatgtcatgtcaaagtgggtact |
346 |
Q |
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| T |
31227328 |
tactttgtgacgatgaagttgataataaattgaagaaatatgagactttgtatcaa-gggggatatgatatgtcaaagagggtact |
31227412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 39370741 - 39370675
Alignment:
| Q |
38 |
actaggaactaatggttggaaaggaaagaattgtggtgatcaatatggtaggagattttaacaaaaa |
104 |
Q |
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| T |
39370741 |
actagtaactaaaggtgggcaaggaaagaattatggtgatcaacatggtagaagatttcaaccaaaa |
39370675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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