View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_low_10 (Length: 430)
Name: NF19421_low_10
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Original strand, 42849515 - 42849912
Alignment:
| Q |
16 |
atgaatgaaattaaccccgcagcctctggccaaaacacatgatatatataatcataaacatatcatcacactcaatccatcatgattctgaattcttcaa |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42849515 |
atgaatgaaattaaccccgcagcctctggccaaaacacatgatatatataatcataaacatatcatcacactcaatccatcatgattctgaattcttcaa |
42849614 |
T |
|
| Q |
116 |
aactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaacatcctcttcaa |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42849615 |
aactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaacatcctcttcaa |
42849714 |
T |
|
| Q |
216 |
actttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccctgattccataagc |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42849715 |
actttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccctgattccataagc |
42849814 |
T |
|
| Q |
316 |
tttatcaaatcctccaaactcaataatccatcgccatcagaatccaatgcctcaattgcaatttccacttctttcaattgaaactctccgccaatctt |
413 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42849815 |
tttatcaaatcctccaaactcaataatccatcaccatcagaatccaatgcctcaattgcaatttccacttctttcaattgaaactctccgccaatctt |
42849912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 87 - 413
Target Start/End: Original strand, 42846599 - 42846925
Alignment:
| Q |
87 |
tcaatccatcatgattctgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaa |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42846599 |
tcaatccatcatgattctgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaa |
42846698 |
T |
|
| Q |
187 |
tcccccagttttttcaacatcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42846699 |
tcccccagttttttcaacatcctcttcaaactttttggcgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatt |
42846798 |
T |
|
| Q |
287 |
tttcttcctctccccctgattccataagctttatcaaatcctccaaactcaataatccatcgccatcagaatccaatgcctcaattgcaatttccacttc |
386 |
Q |
| |
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|||| |||||||||||||||||||| | | | |||||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
42846799 |
tttcctcctctccccctgattccattaacgtaatcaaatctcccaaactcaataacccatcaccatcagaatccaatgcctcaatagcaatttcaacttc |
42846898 |
T |
|
| Q |
387 |
tttcaattgaaactctccgccaatctt |
413 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
42846899 |
tttcaattgaaactctccgccaatctt |
42846925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 91 - 413
Target Start/End: Original strand, 42839795 - 42840117
Alignment:
| Q |
91 |
tccatcatgattctgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatccc |
190 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
42839795 |
tccatcatgattctgaactcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcactttacattcttcaatggacttagaatccc |
42839894 |
T |
|
| Q |
191 |
ccagttttttcaacatcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttc |
290 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||| | ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42839895 |
ccaactttttcaacatcctcttcaaactctttggtgttatgtacccacacccttcatcatcatacatttcaaaagcttccctcaaatccttcaatttttc |
42839994 |
T |
|
| Q |
291 |
ttcctctccccctgattccataagctttatcaaatcctccaaactcaataatccatcgccatcagaatccaatgcctcaattgcaatttccacttctttc |
390 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
42839995 |
ttcctctccccctgattccattagcgctatcaaatcctccaaactcaataacccatcaccatcagaatccaatgcctcaatagcaatctccacttctttc |
42840094 |
T |
|
| Q |
391 |
aattgaaactctccgccaatctt |
413 |
Q |
| |
|
|||||||||||||||| |||||| |
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|
| T |
42840095 |
aattgaaactctccgctaatctt |
42840117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 104 - 393
Target Start/End: Original strand, 33931390 - 33931679
Alignment:
| Q |
104 |
tgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaa |
203 |
Q |
| |
|
||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||| ||| ||||| ||||| |||||||| || |||| || || | |
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|
| T |
33931390 |
tgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagactcacccatcttcttaag |
33931489 |
T |
|
| Q |
204 |
catcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccct |
303 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||| ||| |||||||||| ||||| ||||| |||||||||||||| |||| ||||||||| ||| |
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|
| T |
33931490 |
catcctcttcaaactctttggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatccttcaacttttgttcctctccacct |
33931589 |
T |
|
| Q |
304 |
gattccataagctttatcaaatcctccaaactcaataatccatcgccatcagaatccaatgcctcaattgcaatttccacttctttcaat |
393 |
Q |
| |
|
|||||| | || || |||||||||||||| | ||||| ||||| ||||||| ||| ||||| || ||||| ||||||||||| |
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|
| T |
33931590 |
tcttccatcaaagcaattaattcctccaaactcaaataaccatcaccatctgaatccattgcttcaatagccatttcagcttctttcaat |
33931679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 104 - 393
Target Start/End: Original strand, 33938195 - 33938484
Alignment:
| Q |
104 |
tgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaa |
203 |
Q |
| |
|
||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||| ||| ||||| ||||| |||||||| || |||| || || | |
|
|
| T |
33938195 |
tgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagactcacccatcttcttaag |
33938294 |
T |
|
| Q |
204 |
catcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccct |
303 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||| ||| |||||||||| ||||| ||||| |||||||||||||| |||| ||||||||| ||| |
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|
| T |
33938295 |
catcctcttcaaactctttggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatccttcaacttttgttcctctccacct |
33938394 |
T |
|
| Q |
304 |
gattccataagctttatcaaatcctccaaactcaataatccatcgccatcagaatccaatgcctcaattgcaatttccacttctttcaat |
393 |
Q |
| |
|
|||||| | || || |||||||||||||| | ||||| ||||| ||||||| ||| ||||| || ||||| ||||||||||| |
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|
| T |
33938395 |
tcttccatcaaagcaattaattcctccaaactcaaataaccatcaccatctgaatccattgcttcaatagccatttcagcttctttcaat |
33938484 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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