View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_low_11 (Length: 409)
Name: NF19421_low_11
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 49433272 - 49432879
Alignment:
| Q |
1 |
gatttgattgttgatattcggaagaattgattattgttgaaattttgtgttactatgcttgcagcaaaaggtatttgtgcgaggagggcagaaagaggaa |
100 |
Q |
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| T |
49433272 |
gatttgattgttgatattcggaagaattgattattgttgaaattttgtgttactatgcttgcagcaaaaggtatttgtgcgaggagggcagaaagaggaa |
49433173 |
T |
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| Q |
101 |
gagcctcttgagatggttgtgtacaaccaggggatgttcaagactgagctctgtaacaaatggcaggaaactggcacatgcccttatggagaccactgtc |
200 |
Q |
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| T |
49433172 |
gagcctcttgagatggttgtgtacaaccaggggatgttcaagactgagctctgtaacaaatggcaggaaactggcacatgcccttatggagaccactgtc |
49433073 |
T |
|
| Q |
201 |
aattcgctcatggcattggggagcttcgcccagtgatccgccacccacgctacaaaactgaggtctgcaggatggtccttgctggggttgtgtgccctta |
300 |
Q |
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| T |
49433072 |
aattcgctcatggcattggggagcttcgcccagtgatccgccacccacgctacaaaactgaggtctgcaggatggtccttgctggggttgtgtgccctta |
49432973 |
T |
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| Q |
301 |
tggccatagatgccatttccgtcatgcacttactgaacaagagaaagctatgtcacaacctaagcccagatcaatgaagctggaaagatgaatg |
394 |
Q |
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| T |
49432972 |
tggccatagatgccatttccgtcatgcacttactgaacaagagaaagctatgtcacaacctaagcccagatcaatgaagctggaaagatgaatg |
49432879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 170 - 353
Target Start/End: Complemental strand, 39170897 - 39170714
Alignment:
| Q |
170 |
actggcacatgcccttatggagaccactgtcaattcgctcatggcattggggagcttcgcccagtgatccgccacccacgctacaaaactgaggtctgca |
269 |
Q |
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| T |
39170897 |
actggcacatgcccttatggagaccactgtcaatttgctcacggcattggagagcttcgccaaatgatccgccatccacgctacaaaactgaggtctgca |
39170798 |
T |
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| Q |
270 |
ggatggtccttgctggggttgtgtgcccttatggccatagatgccatttccgtcatgcacttactgaacaagagaaagctatgt |
353 |
Q |
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| T |
39170797 |
ggatggtccttgctggggttgtgtgcccgtgtggccatagatgccatttccgtcatgcacttactgaacaagagaaagctatgt |
39170714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 39170934 - 39170894
Alignment:
| Q |
107 |
cttgagatggtt-gtgtacaaccaggggatgttcaagactg |
146 |
Q |
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| T |
39170934 |
cttgagatggtttgtgtacaaccaggggatgttcaagactg |
39170894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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