View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19421_low_12 (Length: 399)
Name: NF19421_low_12
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 37385439 - 37385822
Alignment:
| Q |
1 |
agttgcaaactgtgagatgttaaagctagggtccaagtatgccggtatgtatggtttgataccaaatgcttctgatatgaaatcagtcgctattctacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37385439 |
agttgcaaactgtgagatgttaaagctagggtccaagtatgctggtatgtatggtttgataccaaatgcttctgatatgaaatcagttgctattctacca |
37385538 |
T |
|
| Q |
101 |
ttgctgaatctcccagttggcttcccacccagaaaatcacgtccatacggctggaaattgctccgagcaaccgtcgatatgaagttgttgttcccggcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37385539 |
ttgctgaatctcccagttggcttcccacccagaaaatcacgtccatacggctggaaattgctccgagcaaccgtcgatatgaagttgttgttcccggcat |
37385638 |
T |
|
| Q |
201 |
ccacggatgagtcgccgaacactatgatcgccggaaccttagcactctttactaaggagagatcaagccattgaagcaaaaggaagcacagaa---tgtt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
37385639 |
ccacggatgagtcgccgaacactatgatcgccggaaccttagcactctttactaaggagagatcaagccattgaagcaaaaggatgcacagaatattgtt |
37385738 |
T |
|
| Q |
298 |
tgtgtatagaaggttctttctctgtcctcctttcattgtcatgtgtagtaactaactctaatgtgacttgagttgtgaacttgt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37385739 |
tgtgtatagaaggttctttctctgtcctcctttcattgtcatgtgtagtaactaactctaatgtgacttgagttgtgaacttgt |
37385822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 132 - 246
Target Start/End: Complemental strand, 36599127 - 36599013
Alignment:
| Q |
132 |
gaaaatcacgtccatacggctggaaattgctccgagcaaccgtcgatatgaagttgttgttcccggcatccacggatgagtcgccgaacactatgatcgc |
231 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| || || || |
|
|
| T |
36599127 |
gaaagtcacgtccatacggctgaaaattgctccgtgcaaccgtcggaatgaagttgttattcccggcatcaacggaagagtctccgaacacgattattgc |
36599028 |
T |
|
| Q |
232 |
cggaaccttagcact |
246 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
36599027 |
cggaacctttgcact |
36599013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University