View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_low_13 (Length: 392)
Name: NF19421_low_13
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 8534738 - 8535117
Alignment:
| Q |
1 |
tgttgttgttgttggtgtccatgagaatgattggaagtaaaggtgatgcttgtgtgattttggaaaggagttgttgagtagtgaaagcaagaacaggttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8534738 |
tgttgttgttgttggtgtccatgagaatgattggaagtgaaggtgatgcttgggtgattttggaaaggagttgttgagtagtgaaagcaagaacaggttt |
8534837 |
T |
|
| Q |
101 |
ggaatcagcgatctgtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgccgagggacatgacggagagacagacaacaggg |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8534838 |
ggaatcagcaatctgtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgccgagggacatgacggagagacagacaacaggg |
8534937 |
T |
|
| Q |
201 |
aaatagatggagttgggagagaggagaaggatgacgtcacctttacggatacccatgttggagagtgaggaggtgacggagtcgacggatcgccagagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8534938 |
aaatagatggagttgggagagaggagaaggatgacgtcacctttacggatacccatgttggagagtgaggaggtgacggagtcgacggatcgccagagtt |
8535037 |
T |
|
| Q |
301 |
gttggtaggtgaattggtggccggtggaggcgtcaatgaaggcgatgtggccgtgatgagcgcgggaggagatgaaagtg |
380 |
Q |
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| T |
8535038 |
gttggtaagtgaattggtggccggtggaggcgtcaatgaaggcgatatggccgtgatgagcgcgggaggagatgaaagtg |
8535117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 8599977 - 8600356
Alignment:
| Q |
1 |
tgttgttgttgttggtgtccatgagaatgattggaagtaaaggtgatgcttgtgtgattttggaaaggagttgttgagtagtgaaagcaagaacaggttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8599977 |
tgttgttgttgttggtgtccatgagaatgattggaagtgaaggtgatgcttgggtgattttggaaaggagttgttgagtagtgaaagcaagaacaggttt |
8600076 |
T |
|
| Q |
101 |
ggaatcagcgatctgtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgccgagggacatgacggagagacagacaacaggg |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8600077 |
ggaatcagcaatctgtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgccgagggacatgacggagagacagacaacaggg |
8600176 |
T |
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| Q |
201 |
aaatagatggagttgggagagaggagaaggatgacgtcacctttacggatacccatgttggagagtgaggaggtgacggagtcgacggatcgccagagtt |
300 |
Q |
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| T |
8600177 |
aaatagatggagttgggagagaggagaaggatgacgtcacctttacggatacccatgttggagagtgaggaggtgacggagtcgacggatcgccagagtt |
8600276 |
T |
|
| Q |
301 |
gttggtaggtgaattggtggccggtggaggcgtcaatgaaggcgatgtggccgtgatgagcgcgggaggagatgaaagtg |
380 |
Q |
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| T |
8600277 |
gttggtaagtgaattggtggccggtggaggcgtcaatgaaggcgatatggccgtgatgagcgcgggaggagatgaaagtg |
8600356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 8613449 - 8613070
Alignment:
| Q |
1 |
tgttgttgttgttggtgtccatgagaatgattggaagtaaaggtgatgcttgtgtgattttggaaaggagttgttgagtagtgaaagcaagaacaggttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8613449 |
tgttgttgttgttggtgtccatgagaatgattggaagtgaaggtgatgcttgggtgattttggaaaggagttgttgagtagtgaaagcaagaacaggttt |
8613350 |
T |
|
| Q |
101 |
ggaatcagcgatctgtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgccgagggacatgacggagagacagacaacaggg |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8613349 |
ggaatcagcaatctgtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgccgagggacatgacggagagacagacaacaggg |
8613250 |
T |
|
| Q |
201 |
aaatagatggagttgggagagaggagaaggatgacgtcacctttacggatacccatgttggagagtgaggaggtgacggagtcgacggatcgccagagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8613249 |
aaatagatggagttgggagagaggagaaggatgacgtcacctttacggatacccatgttggagagtgaggaggtgacggagtcgacggatcgccagagtt |
8613150 |
T |
|
| Q |
301 |
gttggtaggtgaattggtggccggtggaggcgtcaatgaaggcgatgtggccgtgatgagcgcgggaggagatgaaagtg |
380 |
Q |
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| T |
8613149 |
gttggtaagtgaattggtggccggtggaggcgtcaatgaaggcgatatggccgtgatgagcgcgggaggagatgaaagtg |
8613070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 70 - 380
Target Start/End: Complemental strand, 8548141 - 8547831
Alignment:
| Q |
70 |
gttgttgagtagtgaaagcaagaacaggtttggaatcagcgatctgtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgcc |
169 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8548141 |
gttgttgagtagtgaaagcaagaacaggtttggaatcagcaatctgtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgcc |
8548042 |
T |
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| Q |
170 |
gagggacatgacggagagacagacaacagggaaatagatggagttgggagagaggagaaggatgacgtcacctttacggatacccatgttggagagtgag |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8548041 |
gagggacatgacggagagacagacaacagggaaatagatggagttgggagagaggagaaggatgacgtcacctttacggatacccatgttggagagtgag |
8547942 |
T |
|
| Q |
270 |
gaggtgacggagtcgacggatcgccagagttgttggtaggtgaattggtggccggtggaggcgtcaatgaaggcgatgtggccgtgatgagcgcgggagg |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8547941 |
gaggtgacggagtcgacggatcgccagagttgttggtaagtgaattggtggccggtggaggcgtcaatgaaggcgatatggccgtgatgagcgcgggagg |
8547842 |
T |
|
| Q |
370 |
agatgaaagtg |
380 |
Q |
| |
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||||||||||| |
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| T |
8547841 |
agatgaaagtg |
8547831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 93 - 373
Target Start/End: Original strand, 14752501 - 14752781
Alignment:
| Q |
93 |
acaggtttggaatcagcgatctgtttagcaatttcaccagatgtattgagaggattggtggtggtgatgatagcgccgagggacatgacggagagacaga |
192 |
Q |
| |
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|||||||||||||| |||||||| || || |||||| ||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||| | |
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| T |
14752501 |
acaggtttggaatccgcgatctgcttcgcgatttcatgtactgtgttgaggggattggtggtggtgatgatggcgccgagggacatgacactgagacaca |
14752600 |
T |
|
| Q |
193 |
caacagggaaatagatggagttgggagagaggagaaggatgacgtcacctttacggatacccatgttggagagtgaggaggtgacggagtcgacggatcg |
292 |
Q |
| |
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| |||||||| || |||||||| ||||| ||||| ||||| || ||||| || ||| |||||||||||||| ||||||| ||| | ||||||| || |
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| T |
14752601 |
ccacagggaagtaaatggagttaggagaaaggaggaggataacatcaccctttttgattcccatgttggagagagaggaggagacagcatcgacggctct |
14752700 |
T |
|
| Q |
293 |
ccagagttgttggtaggtgaattggtggccggtggaggcgtcaatgaaggcgatgtggccgtgatgagcgcgggaggagat |
373 |
Q |
| |
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||| |||||||||||||| || |||||||||||||||||||| ||||| || ||||||||||||| |||||||||||||| |
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| T |
14752701 |
ccaaagttgttggtaggtaaagtggtggccggtggaggcgtcgatgaaagcagtgtggccgtgatgggcgcgggaggagat |
14752781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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