View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_low_17 (Length: 374)
Name: NF19421_low_17
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 31041040 - 31040702
Alignment:
| Q |
19 |
atcttgggcatcacttgcatggtaatgagactttaggtgccttataaagcttacacgaggattcaactacttttcactccttttcttctctcactttgtc |
118 |
Q |
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| T |
31041040 |
atcttgggtatcacttgcatggtaatgagactttaggtgccttataaagcttacacgaggattcaactacttttcactccttttcttctctcactttgtc |
31040941 |
T |
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| Q |
119 |
aattctctgccattgagattctgcagatttcactctctctacataacaacccagctgtagtttgacgtattgaacaagacttgtctagtctgtctccttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31040940 |
aattctctgccattgagattctgcagatttcactctctctacataacaacccagctgtagtttgacgtattgaacaagacttgtctagtctgtctccttg |
31040841 |
T |
|
| Q |
219 |
ctttcagcatcagctgattttcgaggtctctactgtcctgagctggaattttaacctctttcaattatttgattaagtctttgcatcagataccttacac |
318 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31040840 |
ctttcagcatcagctgattttcgaggtctctcctgtcctgagctggaattttaacctctttcaattatttgattaagtctttgcatcagataccttacac |
31040741 |
T |
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| Q |
319 |
acctctcttacttctccactattttcattacaccttctt |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
31040740 |
acctctcttacttctccactattttcattacaccttctt |
31040702 |
T |
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