View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_low_18 (Length: 373)
Name: NF19421_low_18
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 221 - 352
Target Start/End: Original strand, 15182813 - 15182944
Alignment:
| Q |
221 |
acacatttaccatacactttcttttataaccttagaaaattctttttatttattttatccatgcatttagacttttacttgaattgattaagcatgatac |
320 |
Q |
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| T |
15182813 |
acacatttaccatacactttcttttataacctcagaaaattctttttatttattttatccatgcatttagacttttacttgaattgattaagcatgatac |
15182912 |
T |
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| Q |
321 |
actgctgtaattttaagtatgcattctaaata |
352 |
Q |
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| T |
15182913 |
actgctgtaattttaattatgcattctaaata |
15182944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 15182612 - 15182750
Alignment:
| Q |
21 |
agagagtctagggttcaaacgtcagtcc-ataataatattatctttgcagttatcaactgagttgtgcttatatgacatatgatagtgtgatttaatttg |
119 |
Q |
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| T |
15182612 |
agagagtctagggttcaaacatcaatcccataataatattatctttgcagctatcaactgagttgtgcttacatgacatatgatagtgtgatttaatttg |
15182711 |
T |
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| Q |
120 |
atgaatgtgagagttattcgtaaatgcctaaaattgatc |
158 |
Q |
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| T |
15182712 |
atgaatgtgagagttattcgtaaatgcctaaaattgatc |
15182750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 39901153 - 39901108
Alignment:
| Q |
56 |
tattatctttgcagttatcaactgagttgtgcttatatgacatatg |
101 |
Q |
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| T |
39901153 |
tattatcgttgcagctaccaactgagttgtgcttacatgacatatg |
39901108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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