View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_low_19 (Length: 371)
Name: NF19421_low_19
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 6863706 - 6863424
Alignment:
| Q |
1 |
tatagtttccctttcatttcttaaattccactatggtatcaattacacatttt-cacctgaggcctgaatcttattttagctattactaattctacgaat |
99 |
Q |
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| T |
6863706 |
tatagtttccctttcatttcttaaattccactatggtatcaattacacatttttcacctgaggcctgaatcttattttagctattactagttctacgaat |
6863607 |
T |
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| Q |
100 |
ccggaaccacaattccatgatctgctggttgaatttgaacacttcctatagcataatgaagaatttgctgccaatcctactgcatacgctgcattcaaag |
199 |
Q |
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| T |
6863606 |
ccggaaccacaattccatgatcttctggttgaatttgaacacttcctatagcataatgaagaatttgctgccaatcctactgtatacgctgcattcaaag |
6863507 |
T |
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| Q |
200 |
gcaaacatgctccgtccaaatattgtgatacccttttgttataattgtcaatcctactgcatcatgtattatacaaacatgat |
282 |
Q |
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| T |
6863506 |
gcaaacatgctccgtccaaatattgtgataccatttgcttataattgccaatcctactgcatcatgtattatacgaacatgat |
6863424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 6863428 - 6863390
Alignment:
| Q |
322 |
atgatttgttttgtgcctgcattgcttgtcctttgcttc |
360 |
Q |
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| T |
6863428 |
atgatttgttttgtgccagcattgcttgtcctttgcttc |
6863390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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