View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19421_low_21 (Length: 354)
Name: NF19421_low_21
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 43123945 - 43124277
Alignment:
| Q |
13 |
aatatgatcttgtagcacctaaagtttgacggtagaatccacaaaaa-gtacaagaagctctaatgtagtgcacaaacctaacccaatcctaatacgtga |
111 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43123945 |
aatatgatcttgtagcacctaaagttaggcggtagaatccacaaaaacgtacaagaagctctaatgtagtgcacaaacctaacccaatcttaatacgtga |
43124044 |
T |
|
| Q |
112 |
agaaaccaacttccattaaatggtttattnnnnnnnttgaaaaacgtattacaaacttttatgtgaaagtgaggattcctaacagttttcattacgaact |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43124045 |
agaaaccaacttccattaaatggtttattaaaaaaattgaaaaacgtattacaaacttttatgtgaaagtgaggattcctaacagttttcattgcgaact |
43124144 |
T |
|
| Q |
212 |
aaaattggtcattgtattatagtttcatctcttgagttaattaagtaattatgtta------tattaccatttggacaagcaaacaaaacatttattgtc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43124145 |
aaaattggtcattgtattatagtttcatctcttgagttaattaagtaattatgttatggtcgtgttaccatttggacaagcaaacaaaacatttattgtc |
43124244 |
T |
|
| Q |
306 |
aaaggattatatttaattttgaattaacgtata |
338 |
Q |
| |
|
||| || |||||||||||||||||||||||||| |
|
|
| T |
43124245 |
aaaagaatatatttaattttgaattaacgtata |
43124277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University