View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_low_23 (Length: 326)
Name: NF19421_low_23
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 2127252 - 2127557
Alignment:
| Q |
1 |
catgacataattcacattcctccacatgttaggnnnnnnnttgtttgttagcttggaatagtaatttactagcagggattatttagataagataaaatta |
100 |
Q |
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| T |
2127252 |
catgacataattcacattcctccacatgttaggaaaaaa-ttgtttgttagcttggaatagtaatttactagcagggattatttagataagataaaatta |
2127350 |
T |
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| Q |
101 |
ataagggaattccagagtaagcaggtaattttgaatggttagcattgagaaatgatcattttctcaattgtagataggaaaacacttatgacatatttag |
200 |
Q |
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| T |
2127351 |
ataagggaattccagagtaagcaggtaattttgaatggttagcattgagaaatgatcattttctcaattgtagatagggaaacacttatgacatatttgg |
2127450 |
T |
|
| Q |
201 |
atcaacttatttgagnnnnnnnacaagtataaacaattgtgagagattgtttggaaaagcttatagaaacagcttttgaaatgtctataagctatttata |
300 |
Q |
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| T |
2127451 |
atcaacttatttgagtttttttacaagtataaacaattgtgagagattgtttggaaaagcttatagaaacagcttttgaaatgtctataagctatttata |
2127550 |
T |
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| Q |
301 |
acttatt |
307 |
Q |
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||||||| |
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| T |
2127551 |
acttatt |
2127557 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 31688126 - 31688078
Alignment:
| Q |
260 |
cttatagaaacagcttttgaaatgtctataagctatttataacttattt |
308 |
Q |
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| T |
31688126 |
cttatagaaacagcttatgacttgtctataagctattttcaacttattt |
31688078 |
T |
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