View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19421_low_25 (Length: 317)

Name: NF19421_low_25
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19421_low_25
NF19421_low_25
[»] chr7 (1 HSPs)
chr7 (16-300)||(38902605-38902897)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 38902897 - 38902605
Alignment:
Q  16 atcacactaaccaatccagaatttaattaagattttactttaaaacgcaa---------accaaatcacatgtttctttaaataacttttaatttcaaaa 106  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||         |||||||||||||||||||||||||| ||||||||||||||    
T  38902897 atcacactaaccaatccagagtttaattaagattttactttaaaacgcaatccaatcaaaccaaatcacatgtttctttaaataa-ttttaatttcaaaa 38902799  T
Q  107 cctaagcaacttatcccgaacgtgtactggtgtgggcatatgcggcgaattgatgtgaattgtggagtgataaaacaaacagtgaaaatagtggggtcca 206  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38902798 cctaagcaacttatcccaaacgtgtactggtgtgggcatatgcggcgaattgatgtgaattgtggagtgataaagcaaacagtgaaaatagtggggtcca 38902699  T
Q  207 tgggcggtggagaatcttttatttttgtgtgtgatggctcctcaattcaattctgttctagttagcgttgcctcaacgcacagccccactctgt 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38902698 tgggtggtggagaatcttttatttttgtgtgtgatggctcctcaattcaattctgttctagttagcgttgcctcaacgcaccgccccactctgt 38902605  T

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