View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_low_29 (Length: 296)
Name: NF19421_low_29
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 35029774 - 35029504
Alignment:
| Q |
16 |
atcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggag |
115 |
Q |
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| T |
35029774 |
atcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcgagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggag |
35029675 |
T |
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| Q |
116 |
tgaggagggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctgattcttg |
215 |
Q |
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| T |
35029674 |
tgatgagggtaagatcattcttatacttgttatgttgcttggaagactcaagaaattcaacacggatgcgggtaatccatggaaacttctctgattcttg |
35029575 |
T |
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| Q |
216 |
aatatcaattctacccaacatcagctccgatttcacacaaatgtgtgatctatgatcgatttcatctcact |
286 |
Q |
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| T |
35029574 |
aatatcaattctacccaacatcaactctgatttcacacaaatgtgtgatctatgatcgatttcatatcact |
35029504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 34970472 - 34970281
Alignment:
| Q |
21 |
aacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgagg |
120 |
Q |
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| T |
34970472 |
aacgtaggatttactatgggatacagttgtgaacgacaattacatctagagataaattgtgaaaacaaatggattggatttgttgggaaatggagtgatg |
34970373 |
T |
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| Q |
121 |
agggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctgattc |
212 |
Q |
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| T |
34970372 |
agggtaagatcattctcatacttattatgttgtttggaaggcttaaaaaattcaacatggatggaggcaagccatggaaacttctctgattc |
34970281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 34952618 - 34952406
Alignment:
| Q |
20 |
gaacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgag |
119 |
Q |
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| T |
34952618 |
gaacgtaggattttcaacaggatacagttgtgaactacagttgcatccagagacaaattgtgaaaacaaatggattggatttgttggaaaatggagtgat |
34952519 |
T |
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| Q |
120 |
gagggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctgattcttg---a |
216 |
Q |
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| T |
34952518 |
gagggtaagatcattctcatatttgttatgttgtttggaaggcttaaaaaattcaatatggatggaggcaaagcatggaagcttcattgattcatgatca |
34952419 |
T |
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| Q |
217 |
atatcaattctac |
229 |
Q |
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| T |
34952418 |
atatcaattctac |
34952406 |
T |
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