View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19421_low_3 (Length: 579)
Name: NF19421_low_3
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 87 - 563
Target Start/End: Original strand, 45198600 - 45199076
Alignment:
| Q |
87 |
tatattttagcatcaagaggtctcccttttgcgaccttgcatcatggagtaaaattattcgttgaagatatctctttgtgtggaagttcatgcaaaatat |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45198600 |
tatattttagcatcaagaggtctcccttttgcgaccttgcat---ggagtaaaattattcgttgaagatatctctttgtgtggaagttcatgcaaaatat |
45198696 |
T |
|
| Q |
187 |
cttctcatgaaggataatcttatgcatcgttgaataaatgatgtggatgtttattgtattaaatgattgtggctgccttgaatcatctcgacatttattt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45198697 |
cttctcatgaaggataatcttatgcatcgttgaataaatgatgtggatgtttattgtattaaatgattgtggctgccttgaatcatctcgacatttattt |
45198796 |
T |
|
| Q |
287 |
gttgagtgttcattgtttcaaaatattttgannnnnnnnattaaaggtaaagaaaaatatttggaat---ttagtaatggcatagttgagtttatgatta |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
45198797 |
gttgagtgttcattgtttcaaaatattttgattttttttattaaaggtaaagaaaaatatttggaataatttagtaatggcatagttgagtttatgatga |
45198896 |
T |
|
| Q |
384 |
gtaatgacagataatatagtggaacatctttagtcctttggtcacaaatcgtaagttgtacttttaattgttgcatgccctttgatagcttgtgtggagt |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45198897 |
gtaatgacagataatatagtggaacatctttagtcctttggtcacaaatcgtaagttgtacttttaattgttgcatgccctttgatagcttgtgtggagt |
45198996 |
T |
|
| Q |
484 |
ctatgtgaaaatctctaaataccaatatctttcaccaaaaagagcttgtaagagtaatgcttagaatatatctaattcat |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45198997 |
ctatgtgaaaatctctaaataccaatatctttcaccaaaaagagcttgtaagagtaatgcttagaatatatctaattcat |
45199076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 45198271 - 45198341
Alignment:
| Q |
18 |
cataatagcacttaaataaaattattttaattttcgttaaatttgtcatacatttatgatacaaaatcata |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45198271 |
cataatagcacttaaataaaattattttaattttcgttaaatttgtcatacatttatgatacaaaatcata |
45198341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University