View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19421_low_32 (Length: 271)

Name: NF19421_low_32
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19421_low_32
NF19421_low_32
[»] chr5 (1 HSPs)
chr5 (5-255)||(612204-612454)
[»] chr4 (2 HSPs)
chr4 (8-58)||(39772055-39772105)
chr4 (15-58)||(29615191-29615234)
[»] chr1 (1 HSPs)
chr1 (19-109)||(39717380-39717470)
[»] chr3 (1 HSPs)
chr3 (8-97)||(50691035-50691124)
[»] chr8 (2 HSPs)
chr8 (8-37)||(10089158-10089187)
chr8 (14-58)||(14292451-14292495)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 612204 - 612454
Alignment:
Q  5 gatagagagaatattttttatgttggaaaataagaagggtagtttggtattttttgtagtcactactatggacaataagttgtctcaaggtttcatgagg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  612204 gatagagagaatattttttatgttggaaaataagaagggtagtttggtattttta-tagtcactactatggacaataagttgtctcaaggtttcatgagg 612302  T
Q  105 gacaatccattgctactctgttttgtccaattttatgacaagtttataaatcaaaaagggtacnnnnnnnntgttgggtctagtgta-tttttagcaaat 203  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||| ||||||||||||    
T  612303 aacaatccattgctactctgttttgtccaattttatgacaagtttataaatcaaaaagggtacaaaaaaaatgttgggtctagtgtattttttagcaaat 612402  T
Q  204 caaattcacttatatattgatatattaaaaggtaagtaatggatagaacaac 255  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  612403 caaattcacttatatattgatatattaaaagataagtaatggatagaacaac 612454  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 39772105 - 39772055
Alignment:
Q  8 agagagaatattttttatgttggaaaataagaagggtagtttggtattttt 58  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||||||||    
T  39772105 agagagaatatattttatgttggaaaataaaaagggtattttggtattttt 39772055  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 29615234 - 29615191
Alignment:
Q  15 atattttttatgttggaaaataagaagggtagtttggtattttt 58  Q
    |||||||||||||||||||||||||||  || ||||||||||||    
T  29615234 atattttttatgttggaaaataagaagaatattttggtattttt 29615191  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 39717380 - 39717470
Alignment:
Q  19 tttttatgttggaaaataagaagggtagtttggtattttttgtagtcactactatggacaataagttgtctcaaggtttcatgagggacaa 109  Q
    ||||||||||||||||||| ||||||| ||||||||||||  ||||   |||| | ||||| ||||||||||| |||||  ||||||||||    
T  39717380 tttttatgttggaaaataaaaagggtattttggtatttttgatagtatgtactctagacaaaaagttgtctcatggtttagtgagggacaa 39717470  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 50691035 - 50691124
Alignment:
Q  8 agagagaatattttttatgttggaaaataagaagggtagtttggtattttttgtagtcactactatggacaataagttgtctcaaggttt 97  Q
    ||||| |||||||||||||||||| ||||| ||||||| |||| |||||||  |||||  |||| ||||||| |||  |||||| |||||    
T  50691035 agagataatattttttatgttggataataaaaagggtattttgatatttttgatagtctgtactctggacaaaaagcggtctcatggttt 50691124  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 10089187 - 10089158
Alignment:
Q  8 agagagaatattttttatgttggaaaataa 37  Q
    ||||||||||||||||||||||||||||||    
T  10089187 agagagaatattttttatgttggaaaataa 10089158  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 14292495 - 14292451
Alignment:
Q  14 aatattttttatgttggaaaataagaagggtagtttggtattttt 58  Q
    |||||||||||||||||||||||| || |||| ||||||| ||||    
T  14292495 aatattttttatgttggaaaataaaaatggtattttggtactttt 14292451  T

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