View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_low_42 (Length: 208)
Name: NF19421_low_42
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 27944480 - 27944299
Alignment:
| Q |
18 |
gtagtatggtatgttatgatatgttaagttgggtgctgagtgagactttatacagtggttacgattactgaaaaaaggggataataatgaa----tgata |
113 |
Q |
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| T |
27944480 |
gtagtatggtatgttatgatatgttaagttgggtgctgagtgagtctttatatagtggttacgattactgaaaaaaggggataataatgaatgagtgata |
27944381 |
T |
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| Q |
114 |
acaaatagatgcatgacatgtggaattagttgacggttaaagggaaactgatactagttaggatttttctaggttgttgcttcat |
198 |
Q |
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| T |
27944380 |
acaaatagatgcatgacacgtggaattagttgacggttaaagggaaactga---tagttaggatttttctaggttgttgcttcat |
27944299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 27435969 - 27435881
Alignment:
| Q |
18 |
gtagtatggtatgttatgatatgttaagttgggtgctgagtgagactttatacagtggttacgattactgaa-aaaaggggataataat |
105 |
Q |
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| T |
27435969 |
gtagtatggtatgttatgatatgttaagttgggtgctgagtgagtctttatatagtggttacgattactgaaaaaaaggggattataat |
27435881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 27550501 - 27550579
Alignment:
| Q |
63 |
ctttatacagtggttacgattactgaaaaaaggggataataatgaatgataacaaatagatgcatgacatgtggaattagtt |
144 |
Q |
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| T |
27550501 |
ctttatatagtggttacgattac---aataaagggataataatgagtgataacaaatagatgcaggacacgtggaattagtt |
27550579 |
T |
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