View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_low_5 (Length: 534)
Name: NF19421_low_5
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 13 - 517
Target Start/End: Complemental strand, 46847324 - 46846820
Alignment:
| Q |
13 |
aatatttataaaatgttgaatgaggtagataagcttttggaggaaaatggatttgtgcccgatacttctgaggtactttatgatatggatgaagagtgga |
112 |
Q |
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| T |
46847324 |
aatatttataaaatgttgaacgaggtagataagcttttggaggaaaatggatttgtgcccaatacttctgaggtactttatgatatggatgaagagtgga |
46847225 |
T |
|
| Q |
113 |
aggaaggggctttgagtcaacacagtgagaagctggctattagtttcggtttgataaaaacaaagcctggaactacaattcggatcgtgaagaatcttcg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46847224 |
aggaaggggctttgagtcaacacagtgagaagctggctattagtttcggtttgataaaaacaaagcctggaactacaattcggatcgtgaagaatcttcg |
46847125 |
T |
|
| Q |
213 |
ggtttgtggaaactgtcattcagctaccaagcttatatctaagattttcaatagggaaataattgcaagagatagaaaccgttttcaccattttaaagat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46847124 |
ggtttgtggaaactgtcattcagctaccaagcttatatctaagattttcaatagggaaataattgcaagagatagaaaccgttttcaccattttaaagat |
46847025 |
T |
|
| Q |
313 |
gggttttgctcatgtaatgattgctggtgaaactttgttatctatttgttcaatggaatatatatttttcacttgtgcagaaaaagaagttactaatttg |
412 |
Q |
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| T |
46847024 |
gggttttgctcatgtaatgattgctggtgaaactttgttatctatatgttcaatggaatatatatttttcacttgtgcagaaaaagaagttactaatttg |
46846925 |
T |
|
| Q |
413 |
cattcatataatatgattgattggtacatatgtagtgctctctcactattgaaatgcaatccattctttaattataagtacatatgtgatgactagtaca |
512 |
Q |
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| T |
46846924 |
catttatataatatgattgattggtacatatgtagtgctctcttgctattgaaatgcaatccattctttaattataagtacatatgtgatgactagtaca |
46846825 |
T |
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| Q |
513 |
tgaaa |
517 |
Q |
| |
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||||| |
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| T |
46846824 |
tgaaa |
46846820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 50391710 - 50391775
Alignment:
| Q |
268 |
gaaataattgcaagagatagaaaccgttttcaccattttaaagatgggttttgctcatgtaatgat |
333 |
Q |
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| T |
50391710 |
gaaaaaattgcaagagatagaaaccattttcaccattttaaagatgggttttgctcatgtaatgat |
50391775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 48304563 - 48304498
Alignment:
| Q |
268 |
gaaataattgcaagagatagaaaccgttttcaccattttaaagatgggttttgctcatgtaatgat |
333 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48304563 |
gaaaaaattgcaagagatacaaaccgttttcaccattttaaagatgggttttgctcatgtaatgat |
48304498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 275 - 333
Target Start/End: Original strand, 36359172 - 36359230
Alignment:
| Q |
275 |
ttgcaagagatagaaaccgttttcaccattttaaagatgggttttgctcatgtaatgat |
333 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36359172 |
ttgcaagagatacaaaccgttttcaccattttaaagatgagttttgctcatgtaatgat |
36359230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 38950837 - 38950772
Alignment:
| Q |
268 |
gaaataattgcaagagatagaaaccgttttcaccattttaaagatgggttttgctcatgtaatgat |
333 |
Q |
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|||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
38950837 |
gaaaaaattgcaagagatacaaaccgttatcaccattttaaagatgagttttgctcatgtaatgat |
38950772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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