View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_low_6 (Length: 458)
Name: NF19421_low_6
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 443
Target Start/End: Original strand, 38842964 - 38843390
Alignment:
| Q |
13 |
aatatgaagagcccttgatggtaaatttccatttgaatctttctcatcaggatcaaccatgttgagttgcttgatgatttctcttttaggatcagaaatt |
112 |
Q |
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| T |
38842964 |
aatatgaagagcccttgatggtaaatttccatttgaatctttctcatcaggatcaaccatgttgagttgcttgatgatttctcttttaggatcagaaatt |
38843063 |
T |
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| Q |
113 |
attggatagttcacctttgcacctggctgcatttacaattacaaacatatgaacaaacaagaatatgaaaattttggtgtgcatgcatgtggaaaatagg |
212 |
Q |
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| T |
38843064 |
attggatagttaacctttgcacctggctgcatttacaattacaaaaatat----caacaagaatatgaaaattttggtgtgcatgcatgtggaaaatagg |
38843159 |
T |
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| Q |
213 |
aaaacttacggtatgtgcttcaatgtctttgatccactccttgtgagattcaagatcatcacaagacatacctaacagcataactcctcgtttgttaaac |
312 |
Q |
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| T |
38843160 |
aaaacttacagtatgtgcttcaatgtctttgatccactccttgtgagattcaagatcatcacaagacatacctaacagcataactcctcgtttgttaaac |
38843259 |
T |
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| Q |
313 |
tcagaagcatattgagccatcttaccaagctcagtggtacaaactggggtgaaatcacctggatgagagaagagaatggtccatgaatcagaacagaagt |
412 |
Q |
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| T |
38843260 |
tcagaagcatattgagccatcttaccaagctcagtggtacaaactggggtgaaatcacctggatgagagaagagaatggtccatgaatcagaacagaagt |
38843359 |
T |
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| Q |
413 |
gatggagtttgatcttgccttgggtggtatc |
443 |
Q |
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| T |
38843360 |
gatggagtttgatcttgccttgggtggtatc |
38843390 |
T |
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