View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19421_low_9 (Length: 430)
Name: NF19421_low_9
Description: NF19421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19421_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Original strand, 2668240 - 2668637
Alignment:
| Q |
17 |
aattaagaagctcgttgtttatttagttagtggatttcagaaagaacagtgtctctcactcagttgttccagcatcgtcttatctttcatcgattgaggg |
116 |
Q |
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| T |
2668240 |
aattaagaagctcgttgtttatttagttagtgaattctagaaagaacaatgtctctcactcagttgttccagcatcgccttacctttcatcgattgaagg |
2668339 |
T |
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| Q |
117 |
tttcatcgtctaaaattcaatggcttatcagtcgatgtcggataacgtgatatttatttataggtgtaatggacctcatatttttaggctagaaatatta |
216 |
Q |
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| T |
2668340 |
tttcatcgtctaaaattcaatggcctatcagtcgatgtcggataacgtgatatttatttatagttgtaatggacctcatatttttaggctagaaatatta |
2668439 |
T |
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| Q |
217 |
gcttgaacccatgtagaacaatttccctcatgacttcaagagaatctagactattttcacgtcttaattctcttgtcttcttgcagttttttattttaat |
316 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |
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| T |
2668440 |
gcttaaacccatgtagaacaatttccttcatgacttcaagagaatctagactattttcacgttttaattctcttgtcttcttgcagttcttta-tttaat |
2668538 |
T |
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| Q |
317 |
gtttaagatcatacaaacatatgacattaatatttccaaacaataaaaacaataagattggattaaaagataactaatgtttcaactgagagtaagaat |
415 |
Q |
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| T |
2668539 |
gtttaagatcatacaaacatatgacattaatattttcaaacaataaaaacaataagattggattaaaagataactaatgtttcaactgagagtaagaat |
2668637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 394
Target Start/End: Original strand, 2678872 - 2678964
Alignment:
| Q |
301 |
agttttttattttaatgtttaagatcatacaaacatatgacattaatatttccaaacaataaaaacaataagattggattaaaagataactaat |
394 |
Q |
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| T |
2678872 |
agttttttatttga-tgtctaaaatcatgcaaacatattacctttatatttgcaagcaataagaaccataagattggatgaaaagataactaat |
2678964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 2678724 - 2678803
Alignment:
| Q |
159 |
taacgtgatatttatttataggtgtaatggacctcatatttttaggctagaaatattagcttgaacccatgtagaacaatt |
239 |
Q |
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| T |
2678724 |
taacgtggcatttaataataggtgtaaacaacctcatatttttagggtagaaatattatcttaaacccat-tagaacaatt |
2678803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 388
Target Start/End: Complemental strand, 31325382 - 31325315
Alignment:
| Q |
321 |
aagatcatacaaacatatgacattaatatttccaaacaataaaaacaataagattggattaaaagata |
388 |
Q |
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| T |
31325382 |
aagatcatacaaatatatggcattcatatttgtaagcattaagaacagtaagattggattaaaagata |
31325315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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