View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19422_high_1 (Length: 845)
Name: NF19422_high_1
Description: NF19422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19422_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 358 - 713
Target Start/End: Original strand, 37280259 - 37280614
Alignment:
| Q |
358 |
atgtcgtttaatt-aagtaaatgcatttcatttggtttggatcttaaataattgaatcgaatgctgaaatttagatctaaccagtccattccctctttag |
456 |
Q |
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| T |
37280259 |
atgtcgtttaatttaagtaaatgcatttcatttggcttggatcttaaataattgaatcgaatgctgaaatttagatctaaccagtctattccctctttag |
37280358 |
T |
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| Q |
457 |
acaacaacaggaaaacccaaattttttattttgagcaaatttctggactataactaaccataagcatttctagcnnnnnnnctaactataaccatatatt |
556 |
Q |
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| T |
37280359 |
acaacaacaagaaaacccaaattttttattttgagcaaatttctg-actataactaaccataagcatttctagcaaaaaaactaactataaccatatatt |
37280457 |
T |
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| Q |
557 |
gttgatgtatacttccataaatagttgaaatgtgaggtgtaagagtgtttgataccaatgattttcctcatgttttggaatacctttgaactgtaataat |
656 |
Q |
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| T |
37280458 |
gttgatgtatacttccataaatagttaaaatgtgaggtgtaagagtgtttgataccaatgattttcctcatgttttggaatacctttgaactgtaataat |
37280557 |
T |
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| Q |
657 |
tttatgtatattatgaaccctttcctacgaatactccaacccaccaacattccttta |
713 |
Q |
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| T |
37280558 |
tttatgtatattatgaaccctttcctacgaatactccaacccaccaacattccttta |
37280614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 37279943 - 37280238
Alignment:
| Q |
15 |
aatatcaccgggtcagagctgcagatcagaacctgcatctacaaatttcaagcttatgacaagtaaaagaaattactgtaatttctggatttaaaagggt |
114 |
Q |
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| T |
37279943 |
aatatcacctggtcagagctgcagatcagaacctgcatctacaaatttcaagcttatgacaagtaaaagaaattactgtaatttctggatttaaaagggt |
37280042 |
T |
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| Q |
115 |
aaaagaaattattgtatattgtattgaccataataagtttatgacaagtaacaaattacttcaaatttttatcatactatactcgacgattataaagtct |
214 |
Q |
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| T |
37280043 |
aaaagaaattattgtatattgtattgaccataataagtttatgacaagtaacaaattacttcaaatttttatcatactatactcgacgattataaagtct |
37280142 |
T |
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| Q |
215 |
agctcaagccaacttttttccgcctcaatctacgatatgttgtatcattaggtttgtagaggatccaaatatttgtttactcataatagaatttttag |
312 |
Q |
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| T |
37280143 |
agctcaagccaacttttttccgcctcaatctacgatatgttgtatcattaggtttgtagaggatccaaatatt--tttactcagaatagaatttttag |
37280238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 590 - 713
Target Start/End: Original strand, 37276671 - 37276794
Alignment:
| Q |
590 |
gaggtgtaagagtgtttgataccaatgattttcctcatgttttggaatacctttgaactgtaataattttatgtatattatgaaccctttcctacgaata |
689 |
Q |
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| T |
37276671 |
gaggtgtaagaatgtttgataccaacgactttcctcacacttcggaatccctttgaactattataattttatgtatattatcaatcatttcctacgacta |
37276770 |
T |
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| Q |
690 |
ctccaacccaccaacattccttta |
713 |
Q |
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| T |
37276771 |
ctccaatccaccaacatttcttta |
37276794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 788 - 830
Target Start/End: Original strand, 37280695 - 37280737
Alignment:
| Q |
788 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaat |
830 |
Q |
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| T |
37280695 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaat |
37280737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 788 - 830
Target Start/End: Original strand, 37276846 - 37276888
Alignment:
| Q |
788 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaat |
830 |
Q |
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| T |
37276846 |
tcatggcacattcaaggcatgttgttattctagcccttgtaat |
37276888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 528
Target Start/End: Original strand, 37276562 - 37276635
Alignment:
| Q |
452 |
tttagacaacaacaggaaaacccaaattttttattttgagcaaatttctggactataactaaccataagcatttcta |
528 |
Q |
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| T |
37276562 |
tttagataataacatgaagacccaaatttt--attttgagcaaatttct-cactataactaaccataactatttcta |
37276635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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