View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19422_low_4 (Length: 287)
Name: NF19422_low_4
Description: NF19422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19422_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 36455645 - 36455371
Alignment:
| Q |
1 |
acacaccatagttatttggccacatagatagagggttaggatcaacacaacaaactttgattccataaagggaaacttgttccgcaaggcgaatgcctgc |
100 |
Q |
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| T |
36455645 |
acacaccatagttatttggccacatagatagagggttaggatcaacacaacaaaccttgattccataaagggaaacttgttccgcaaggcgaattcctgc |
36455546 |
T |
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| Q |
101 |
agggccagcaccgactatgaccacgtcgaattgagaacgatcagaagggtggtgccatggaagatcgaaatctaaggcttcgggttgatactcgggtttt |
200 |
Q |
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| T |
36455545 |
agggccagcaccgactatgatcacgtcgaattgagaacgatcagaagggtggtgccatggaagatcgaaatctaaggcttcgggttgatactcggatttt |
36455446 |
T |
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| Q |
201 |
aagtcaaggaaatttccaaactttttggtactgttgatcatggtattagtttttcttgaagaaggaagtgatatt |
275 |
Q |
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| T |
36455445 |
aagtcaaggaaatttccaaactttttggtactgttgatcatggtattagtttttcttgaagaaggaagtgatatt |
36455371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 36462922 - 36463148
Alignment:
| Q |
3 |
acaccatagttatttggccacatagatagagggttaggatcaacacaacaaactttgattccataaagggaaacttgttccgcaaggcgaatgcctgcag |
102 |
Q |
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|||||||||||||| ||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||| | |
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| T |
36462922 |
acaccatagttattaggccagatagacagagggttaggatcaacacaacaaaccttcattccataaagggaaacttgttctgcaaggcgaattcctgcgg |
36463021 |
T |
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| Q |
103 |
ggccagcaccgactatgaccacgtcgaattgagaacgatcagaagggtggtgccatggaagatcgaaatctaaggcttcgggttgatactcgggttttaa |
202 |
Q |
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| T |
36463022 |
ggccagcaccgattatgatcacattgaaacaagtgtgatcagaagggtgaaacaatggaaggtcgaaatccaaggcttcgggttgatactcggattttaa |
36463121 |
T |
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| Q |
203 |
gtcaaggaaatttccaaactttttggt |
229 |
Q |
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|||||| ||||||||||||||| |||| |
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| T |
36463122 |
gtcaagaaaatttccaaactttctggt |
36463148 |
T |
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